Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30630
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                29   2.1  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_44902| Best HMM Match : EGF (HMM E-Value=9.6e-06)                   27   8.5  
SB_53801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 52  PHPLTSPTRSVVSPPAP*YLPNL 120
           P P  SP+   +SPPAP ++P++
Sbjct: 184 PAPAISPSAPAISPPAPVFIPHM 206


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 88  RLRNASAK*GGEVLRVTSARGRA 20
           R+R+AS K GGE + + SA GR+
Sbjct: 338 RIRSASPKDGGEYMCIVSASGRS 360


>SB_44902| Best HMM Match : EGF (HMM E-Value=9.6e-06)
          Length = 335

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 551 EVWGLMGHDRRGRLVSPLAPTLQINYVSLNTPVLAVSLNTATFKLPKPYTQQRG 390
           +VW + G  +RG +   L   ++ N +  N P + +  NT+  +L     Q+RG
Sbjct: 128 QVWLVDGQPKRGDIRVGLKYNIRGNNICNNWPAVFLMKNTSNHQLVLASAQRRG 181


>SB_53801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 95  GGETTERVGEVRG*GIASDVSEGEGSAVS 9
           GG  T RVG++ G  +   V + EGS+V+
Sbjct: 150 GGSVTLRVGDIEGGSVTLRVGDIEGSSVT 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,291
Number of Sequences: 59808
Number of extensions: 231222
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)