Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30630
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    36   0.015
At4g36630.2 68417.m05198 expressed protein                             30   1.3  
At4g36630.1 68417.m05199 expressed protein                             30   1.3  
At1g61080.1 68414.m06877 proline-rich family protein                   29   1.7  
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t...    29   2.3  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   3.0  
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil...    28   4.0  
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil...    28   4.0  
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ...    28   4.0  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   5.3  
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t...    28   5.3  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   7.0  
At1g30320.1 68414.m03708 remorin family protein contains Pfam do...    27   7.0  
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot...    27   9.2  

>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 13  TAEPSPSLTSLAIPHPLTSPTRSVVSPPAP*YLPN 117
           TA P+PS+T    P P  +PT + VSPPA   LP+
Sbjct: 42  TAAPTPSITPTPTPTPSATPTAAPVSPPAGSPLPS 76


>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -3

Query: 480 KLCLTQHPGAGCFIKHRYF*IAKTIYPTTW-KKSLKLSLNCQFIIIN 343
           ++C+ +H G G F++ R + +  T+   +W  +++ L +  +++I+N
Sbjct: 131 RVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILN 177


>At4g36630.1 68417.m05199 expressed protein
          Length = 519

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/47 (23%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -3

Query: 480 KLCLTQHPGAGCFIKHRYF*IAKTIYPTTW-KKSLKLSLNCQFIIIN 343
           ++C+ +H G G F++ R + +  T+   +W  +++ L +  +++I+N
Sbjct: 131 RVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILN 177


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 22  PSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           P P  T++A P P   P R+ V+PP P
Sbjct: 513 PPPLPTTIAAPPPPPPPPRAAVAPPPP 539


>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 177

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 22  PSPSLTSLAIPHPLTSPTRSVVSP-PAP*YLPNLKGI*GFC 141
           PSPS+ + ++P P + PT SV SP P P   P   G  G C
Sbjct: 55  PSPSVPTPSVPTP-SVPTPSVPSPNPTPVTPPRTPGSSGNC 94


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 22  PSPSLTSLAIPHPLTSPTRSVVSPPAP*Y 108
           P P + S + P P+ SP   V SPP P Y
Sbjct: 536 PQPPMPSPSPPSPIYSPPPPVHSPPPPVY 564


>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 10  ETAEPSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           E A P+P++    +  P T+ T  V  PP P
Sbjct: 195 EEATPAPAVVETPVKEPETTTTAPVAEPPKP 225


>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 10  ETAEPSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           E A P+P++    +  P T+ T  V  PP P
Sbjct: 195 EEATPAPAVVETPVKEPETTTTAPVAEPPKP 225


>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
           (FLA8)
          Length = 420

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   SETAEPSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           S +  P+P   +   P P  +P+ +  SPPAP
Sbjct: 337 SPSPAPAPEPVTAPTPSPADAPSPTAASPPAP 368


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 22  PSPSLTSLAIPHPLTSPTRSVVSPPAP*YLP 114
           P+P+L S   P P T P    + PP P Y P
Sbjct: 34  PTPTLPS---PSPATKPPSPALKPPTPSYKP 61


>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 182

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 22  PSPSLTSLAIPHPLTSPTRSVVSP-PAP*YLPNLKGI*GFC 141
           P+PS+ S ++P P + P+ SV SP P P   P   G  G C
Sbjct: 60  PTPSVPSPSVPTP-SVPSPSVPSPNPTPVIPPRTPGSSGNC 99


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 13  TAEPSPSLTSLAIPHPLTSPTRSVVSPPAP*YLP 114
           T+  SP + S   P P+ SP   V SPP P + P
Sbjct: 637 TSPQSPPVHSPPPPPPVHSPPPPVFSPPPPMHSP 670


>At1g30320.1 68414.m03708 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 509

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 19  EPSPSLTSLAIPHPLTSPTRSVVSPP 96
           EPS S+T +    PL SPT S+ S P
Sbjct: 301 EPSRSVTPVGATTPLRSPTSSLPSTP 326


>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
           similar to SP|P13709 Female sterile homeotic protein
           (Fragile-chorion membrane protein) {Drosophila
           melanogaster}; contains Pfam profile PF00439:
           Bromodomain
          Length = 487

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 10  ETAEPSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           E   P+PS+  +  P P   P+ S  SPP P
Sbjct: 251 EFPAPAPSIAPIVEPLPAIVPSPSPSSPPPP 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,240
Number of Sequences: 28952
Number of extensions: 159917
Number of successful extensions: 636
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)