Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30629X
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    66   3e-12
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.67 
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   2.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   2.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   2.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   3.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   3.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   6.2  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    24   8.2  

>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 65.7 bits (153), Expect = 3e-12
 Identities = 39/78 (50%), Positives = 44/78 (56%)
 Frame = +1

Query: 22  KRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 201
           KRK +H    H   R RV  R  DLD+I  DL E  +EK     +D DLPG  QHYC+ C
Sbjct: 7   KRK-HHSNGNHALFRTRVYGR--DLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCIEC 61

Query: 202 ARYFIDEQALNDHFKTKV 255
           ARYF   QAL  H K KV
Sbjct: 62  ARYFDSSQALLVHKKGKV 79



 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 22/48 (45%), Positives = 27/48 (56%)
 Frame = +3

Query: 249 KSHKRRLKALELEPYTIEESERAAGHGSFKRATXRKIVSQNIETSQAD 392
           K HKRRLK L  EPYT EE+E A   G  K++   K+ + N     AD
Sbjct: 78  KVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKL-ADNSNVVMAD 124


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 172 LADLNQLFGSVIFQHFLPLNLGLFHP 95
           L +L  LF      +FLPL +GLF+P
Sbjct: 73  LVELLSLFYCAYVMYFLPLEVGLFNP 98


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 100 EIDQDLKEENA----EKLLNQKVDLDLPGA 177
           E+D + KEEN     EKL N KVD + P A
Sbjct: 121 EVDAEPKEENKKEIPEKLKNVKVDTENPSA 150


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 100 EIDQDLKEENAEKLLNQKVDLDLP 171
           EID D+K+E  + L  QK+  ++P
Sbjct: 189 EIDSDIKDEKQKSLEEQKIAPEIP 212


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 166 DLNQLFGSVIFQHFLPLNLGLFHPNLSFCY 77
           DL+++ G V +  ++ L +GLF   + F Y
Sbjct: 439 DLDEIVGMVFYGRYIVLLMGLFSMYVGFVY 468


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 76  RNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 177
           + R+K +++   D    +A+K++NQ++ + LP A
Sbjct: 300 KQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSA 333


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 341 SFETPVASSSL*LFYSIRFKLECF*SPFMTFVLK*SFKACSSMKYLA 201
           S  T ++SS++ L   +   L+    PF+  +L    K CS  K LA
Sbjct: 336 SLRTTLSSSAIQLIKEMAIILKSNIDPFLELILPNLLKVCSVTKKLA 382


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 28  KIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDL 162
           KIY   + HL KR + +  K+  +++ ++  E+   K+ +Q  DL
Sbjct: 91  KIYQSVEEHLSKRRKSQREKQ--EQLQKEKYEKENPKVSSQFADL 133


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 321 GHGSFKRATXRKIVSQNIETSQADE 395
           G G+F +   RK+V  +++T   DE
Sbjct: 48  GAGTFYQTRKRKVVRNHLDTGDEDE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,464
Number of Sequences: 5004
Number of extensions: 24812
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)