Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30629X
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 4e-16
SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4) 33 0.12
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38) 30 0.67
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.67
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34) 29 1.2
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.5
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 29 2.0
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 28 2.7
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45) 28 2.7
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 6.2
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 27 8.2
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_43332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 81.0 bits (191), Expect = 4e-16
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +1
Query: 22 KRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 201
++K H D HLKK++R R R KDLD+I +DLK A KLL+Q+VD DLPG Q YCL C
Sbjct: 5 RKKRMHSNDKHLKKKYRTRKRTKDLDQIHEDLKPVKAAKLLSQEVDTDLPGCGQFYCLQC 64
Query: 202 ARYFIDE 222
A + E
Sbjct: 65 ALRMLKE 71
Score = 34.3 bits (75), Expect = 0.041
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 LKALELEPYTIEESERAAGHGSFK-RATXRKIVSQNIETSQAD 392
L+ L+ PYTIEESE AAG GS+ +T ++V Q+ + D
Sbjct: 66 LRMLKEVPYTIEESEAAAGMGSYPFTSTKPELVDQHKAEMEID 108
>SB_7923| Best HMM Match : Remorin_C (HMM E-Value=1.4)
Length = 201
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 16 TYKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYC 192
T +K++HC + LKK V KK LD+ E EKL+ +K +LD A H+C
Sbjct: 143 TLWKKLHHCNE-ELKKYSHVN--KKALDQFINF--SEQKEKLMKRKDELDKGYEASHHC 196
>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 31.5 bits (68), Expect = 0.29
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Frame = +1
Query: 4 QTDMTYKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKL---------LNQK 153
++D ++ R C RWR N+ + + K + L +N+
Sbjct: 144 RSDTSFSRTCLFCKQHFEGNRWRFANKSPGSSKQQRCSAKTQRLTSLNKMVLFLVHINEF 203
Query: 154 VDLDLPGAAQHYCLHCARYFIDEQALNDHFKTK 252
+DL +CL+C + F D Q L DH + K
Sbjct: 204 LDLLEEKLESLHCLYCEKVFKDRQILKDHMRKK 236
>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.7 bits (66), Expect = 0.50
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 22 KRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEK 138
KRK+Y+C T KR R +++++E +++ +EE E+
Sbjct: 111 KRKLYYCNLTITIKRRRREEEEEEVEEEEEEEEEEEEEE 149
>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.7 bits (66), Expect = 0.50
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 181 QHYCLHCARYFIDEQALNDHFK 246
++ CLHCAR F + LN+H K
Sbjct: 252 EYKCLHCAREFYRKDNLNEHLK 273
>SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38)
Length = 283
Score = 30.3 bits (65), Expect = 0.67
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 163 DLPGAAQHYCLHCARYFIDEQALNDHFKTKVINGD*KHSS 282
D P +++C HC + F+ ++ L H T+V + H +
Sbjct: 236 DDPQGKRNFCDHCGKEFLLKEVLRTHINTEVAKREPSHET 275
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 30.3 bits (65), Expect = 0.67
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 79 NRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFK 246
N+ ++ +Q L ++ K +K + + ++ CLHCAR F + LN H K
Sbjct: 520 NQSFQCEKCEQSLNRKDTFKRHMKKYNQE----KEYKCLHCAREFYRKDNLNQHLK 571
>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
Length = 405
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 49 THLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCL 195
T +K R + + ++D ++ D D+ +E A L ++K L +PG Q L
Sbjct: 127 TKIKNRRQEGSDQEDSEDDDSDIDDELAGYLYDKKPSLPIPGYGQSMVL 175
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 166 LPGAAQHYCLHCARYFIDEQALNDHFKT 249
LP +H C+ C + F AL HF+T
Sbjct: 181 LPRERKHECMECQKLFDSPNALEVHFRT 208
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +1
Query: 79 NRKKDLDEIDQDLKE---ENAEKLLNQKVDL----DLPGAAQHYCLHCARYFIDEQALND 237
NR + L + +++ N +K K DL A +H C C + + D ++L D
Sbjct: 228 NRNRHLRTVHSNIRPYTCNNCQKTFKTKCDLKQHISRHNAGKHQCNVCKKSYADLKSLED 287
Query: 238 HFKTKV 255
H ++ V
Sbjct: 288 HLRSHV 293
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 184 HYCLHCARYFIDEQALNDHFKTKVIN 261
+YC HC R F + L H KT V N
Sbjct: 298 NYCDHCNRTFYIRELLRQHIKTVVKN 323
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 16 TYKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENA--EKLLNQK 153
TY+R++ H G + K RV KK + ++ DL +E ++++N+K
Sbjct: 158 TYQRELKHTGKANAAKEIRV--LKKVVQNLESDLMKEKTKHQRIINKK 203
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 142 LNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKV 255
L Q + P A ++YC HC + F + AL H K V
Sbjct: 992 LQQNPAKEDPRANENYCDHCDKTFEETDALRLHVKKAV 1029
>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
Length = 853
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 142 VIFQHFLPLNLGLFHPNLSFCYALSTAFLNVC 47
+I F+P ++ + + F YALST FLN+C
Sbjct: 13 LILAVFVPSHIAVIAISSFFGYALSTDFLNLC 44
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 181 QHYCLHCARYFIDEQALNDHFKT 249
+HYC +CA F + L +H K+
Sbjct: 275 KHYCNYCAEVFAAKARLQEHVKS 297
>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 181 QHYCLHCARYFIDEQALNDHFKT 249
+HYC +CA F + L +H K+
Sbjct: 207 KHYCNYCAEVFAAKARLQEHVKS 229
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 19 YKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVD 159
YK+ I T +K + RK LD+I +DL E+++ + + Q D
Sbjct: 146 YKKLILEKNGTISRKEFVCEGRKIPLDDIRKDLLEKHS-RFIRQNTD 191
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 7 TDMTYKRKIYHCGDTHLKKRWR--VRNRKK 90
T +T K YH H K++WR V+ RKK
Sbjct: 256 TSITEKSDTYHKERDHAKEQWRHSVKERKK 285
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 172 GAAQHYCLHCARYFIDEQALNDHFKTKVING 264
G + C HC RYF L H + +NG
Sbjct: 113 GEKPYKCEHCGRYFGLSNVLARHIRNVHVNG 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,857
Number of Sequences: 59808
Number of extensions: 172814
Number of successful extensions: 700
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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