Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30629X
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 50 5e-07
At1g54920.2 68414.m06269 expressed protein 31 0.24
At1g54920.1 68414.m06270 expressed protein 31 0.24
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 29 0.95
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 1.3
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 28 2.9
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 28 2.9
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 28 2.9
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 2.9
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta... 28 2.9
At1g28430.1 68414.m03495 cytochrome P450, putative similar to cy... 28 2.9
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 27 3.8
At4g02405.1 68417.m00325 expressed protein 27 3.8
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 27 3.8
At1g56660.1 68414.m06516 expressed protein 27 3.8
At4g29630.1 68417.m04222 cytidine deaminase, putative / cytidine... 27 5.1
At4g29620.1 68417.m04221 cytidine deaminase, putative / cytidine... 27 5.1
At1g13120.1 68414.m01521 expressed protein contains Prosite PS00... 27 5.1
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 6.7
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden... 27 6.7
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 26 8.9
At5g54460.1 68418.m06782 wound-responsive protein-related contai... 26 8.9
At5g35790.1 68418.m04292 glucose-6-phosphate 1-dehydrogenase / G... 26 8.9
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 26 8.9
At2g04850.1 68415.m00500 auxin-responsive protein-related relate... 26 8.9
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 50.4 bits (115), Expect = 5e-07
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 151 KVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTK 252
++D DLPG Q YCLHC RYF + +DHFKTK
Sbjct: 47 QLDEDLPGMGQFYCLHCDRYFSNVSVRDDHFKTK 80
Score = 35.1 bits (77), Expect = 0.019
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 163 DLPGAAQHYCLHCARYFIDEQALNDHFKTK 252
DLPG Q CL C R F + ++ HFKTK
Sbjct: 131 DLPGMGQFNCLLCHRNFSNASVMDYHFKTK 160
>At1g54920.2 68414.m06269 expressed protein
Length = 890
Score = 31.5 bits (68), Expect = 0.24
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 10 DMTYKRKI--YHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 156
D+ +K KI YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 576 DLFHKLKIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 627
>At1g54920.1 68414.m06270 expressed protein
Length = 430
Score = 31.5 bits (68), Expect = 0.24
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 10 DMTYKRKI--YHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 156
D+ +K KI YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 240 DLFHKLKIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 291
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 29.5 bits (63), Expect = 0.95
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 25 RKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCA 204
+K+ C + K+ K+D D+ D+D EE E+ + + H C C
Sbjct: 173 KKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEED-KSTAHIARKRSNAHECTICH 231
Query: 205 RYFIDEQALNDH 240
R F QAL H
Sbjct: 232 RVFSSGQALGGH 243
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 58 KKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALN 234
KK+ V R + E+D DL + ++ K +L A Q LH RYF+ E +
Sbjct: 433 KKKEEVEERT--MQEVDMADLSTHLPKSFISSKDVKNLIAACQ--ALHRVRYFLQENSSR 488
Query: 235 DHFK 246
D FK
Sbjct: 489 DDFK 492
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 249 KSHKRRLKALELEPYTIEESERAAGHGSFKRATXRKIVSQNIETSQADEDG 401
+ HKR++ ++EP EE E+A K + +K Q ++++ DE G
Sbjct: 533 RKHKRQMTDTKIEPKEEEEDEKAEEDEEEKGFSVKK---QEVKSASEDEKG 580
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 91 DLDEIDQDLKEENAEKLLNQKVDLDLPG 174
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 91 DLDEIDQDLKEENAEKLLNQKVDLDLPG 174
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 43 GDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQK 153
GDT+L +++ R+ K ++ ID+DL +E + + LN+K
Sbjct: 1049 GDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEK 1086
>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9UBS4 DnaJ
homolog subfamily B member 11 precursor Homo sapiens;
contains Pfam profile PF00226 DnaJ domain
Length = 300
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 55 LKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 177
L++ V N+KK +IDQ L+EE L+ ++DL + GA
Sbjct: 167 LERTGGVSNKKKGSKQIDQKLQEE-----LSNELDLQIKGA 202
>At1g28430.1 68414.m03495 cytochrome P450, putative similar to
cytochrome P450 (CYP93A1) GI:1435059 from [Glycine max]
Length = 521
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = -3
Query: 181 VLLLADLNQLFGSVIFQHFLPLNLGLFHPNLSFCYALSTAFLNVCRHNDISCAY 20
+LL A +++ F + ++ L+L +FH + + STA+ ++ + NDI+ +Y
Sbjct: 55 LLLFASIHKCFQKISSKYGPFLHLRIFHVPIVLVSSASTAY-DIFKTNDINVSY 107
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 91 DLDEIDQDLKEENAEKLLNQKVDLDLPG 174
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVHMDISG 56
>At4g02405.1 68417.m00325 expressed protein
Length = 333
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 151 KVDLDLPGAAQHYCLHCARYFIDEQAL 231
K DLD+ QHYCL A FID++ L
Sbjct: 99 KKDLDIHEQQQHYCL--ATKFIDDKLL 123
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 97 DEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDH 240
DE +++K+++ EK ++ D D + C +C R F QAL H
Sbjct: 68 DESSENIKDKDKEK--DKDKDKDNNNNRRFECHYCFRNFPTSQALGGH 113
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 82 RKKDLDEIDQDLKEENAEKLLNQKVDLD 165
+KK+ DE DQ++KE++++K N+K + D
Sbjct: 231 KKKEHDETDQEMKEKDSKK--NKKKEKD 256
>At4g29630.1 68417.m04222 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
3 (CDA3) [Arabidopsis thaliana] GI:3818577, cytidine
deaminase homolog DesF [Arabidopsis thaliana]
GI:4836448; similar to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700; contains Pfam profile
PF00383: Cytidine and deoxycytidylate deaminase
zinc-binding
Length = 223
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 154 VDLDLPGAAQHYCLHCARYFIDEQALN 234
V+++LPG H+ +H ++ + ALN
Sbjct: 61 VNVELPGLPLHHSIHAEQFLVTNLALN 87
>At4g29620.1 68417.m04221 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
2 (CDA2) [Arabidopsis thaliana] GI:5080713, cytidine
deaminase homolog DesE [Arabidopsis thaliana]
GI:4836447; similar to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700; contains Pfam profile
PF00383: Cytidine and deoxycytidylate deaminase
zinc-binding
Length = 337
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 154 VDLDLPGAAQHYCLHCARYFIDEQALN 234
V++D PG H+ +H ++ + ALN
Sbjct: 83 VNVDFPGLPLHHSIHAEQFLVTNLALN 109
>At1g13120.1 68414.m01521 expressed protein contains Prosite
PS00012: Phosphopantetheine attachment site; similar to
GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes
from this gene
Length = 611
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 10 DMTYKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQK 153
D+ Y+RK+ DTHL R K ++E + ++ E A++ +K
Sbjct: 188 DLQYQRKVAEALDTHLTAVQREHKIKSQIEE--RKIRSEEAQEEARRK 233
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +1
Query: 76 RNRKKDLDEIDQDLKEENAEKLLNQKVDLD 165
R R+ DL+ + ++L EEN ++L+N+K DLD
Sbjct: 404 RQRRTDLEAL-RNL-EENYQQLINRKNDLD 431
>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
identical to FKBP12 interacting protein (FIP37)
GI:3859944 from [Arabidopsis thaliana]
Length = 330
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 73 VRNRKKDLDEIDQDLKEENA 132
V ++K ++DEID+D KEE A
Sbjct: 308 VGDKKDEVDEIDEDAKEEIA 327
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 190 CLHCARYFIDEQALNDHFKTKVIN 261
C +C + F DE+ L+ HF T+ N
Sbjct: 107 CGYCKKSFNDEKFLDKHFSTRHYN 130
>At5g54460.1 68418.m06782 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 141
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 4 QTDMTYKRKIYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQK 153
+ D+ R+ Y G T LKK + RK ++ +KEE AE + +K
Sbjct: 73 ELDLQKGREKYK-GATRLKKEKKKWERKNKRNQSKSPVKEEGAEPVKEEK 121
>At5g35790.1 68418.m04292 glucose-6-phosphate 1-dehydrogenase / G6PD
(APG1) identical to SP|Q43727 Glucose-6-phosphate
1-dehydrogenase, cytoplasmic isoform (EC 1.1.1.49)
(G6PD) {Arabidopsis thaliana}
Length = 576
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 79 NRKKDLDEIDQDLKEENAEKLLNQKVDLDLP 171
N ++D E+++ LKE+ A K+ N+ L +P
Sbjct: 176 NSEEDFAELNKKLKEKEAGKISNRLYYLSIP 206
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 85 KKDLDEIDQDLK---EENAEKLLNQKVDLDLPGAAQHYCLHCARYFID 219
+K + +++D E AE L + + D+PG Q + CAR +D
Sbjct: 94 RKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLD 141
>At2g04850.1 68415.m00500 auxin-responsive protein-related related
to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 404
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 139 IFQHFLPLNLGLFHPNLSFCYALSTAFLNVCRHNDISCAYMSCR 8
+FQ F L G + L +C LST + VC +++ + CR
Sbjct: 339 VFQGFEVLREGRSYAKLGYCLCLST-LVGVCVAMEVNSWVVFCR 381
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,326
Number of Sequences: 28952
Number of extensions: 126021
Number of successful extensions: 502
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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