Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30628
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 137 6e-34
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 132 3e-32
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 78 5e-16
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 77 8e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 69 4e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 1e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 4e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 1e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 2e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 4e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 4e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 58 7e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 57 1e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 2e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 1e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 52 4e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 47 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 47 1e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 2e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 1e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 1e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 33 0.024
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.22
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 0.88
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 2.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 3.6
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 4.7
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 4.7
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha... 25 6.2
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 6.2
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.2
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 24 8.2
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 24 8.2
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 24 8.2
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 137 bits (332), Expect = 6e-34
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVINYDLP NRE YIHRIGRSGRFGRKGVAINFV ++D+RILRDIEQYYS
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYS 380
Query: 181 TQIDEMPMNVADLI 222
T IDEMPMN+ D++
Sbjct: 381 TVIDEMPMNIGDMV 394
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 132 bits (318), Expect = 3e-32
Identities = 59/74 (79%), Positives = 69/74 (93%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVINYDLP NRE YIHRIGR GRFGRKGV+INFV +DD+R++R+IEQ+Y+
Sbjct: 319 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYN 378
Query: 181 TQIDEMPMNVADLI 222
T I+EMPMN+ADLI
Sbjct: 379 THIEEMPMNIADLI 392
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 78.2 bits (184), Expect = 5e-16
Identities = 33/67 (49%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYS 180
RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI F S +D +IL I++ +
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFE 416
Query: 181 TQIDEMP 201
I E+P
Sbjct: 417 VNITELP 423
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 77.4 bits (182), Expect = 8e-16
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HRIGRSGRFG +G+AI+F+ D L IE T
Sbjct: 343 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGT 402
Query: 184 QIDEMPMNV 210
+I +P ++
Sbjct: 403 EIQPIPPSI 411
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 68.5 bits (160), Expect = 4e-13
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 7/74 (9%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNR------ELYIHRIGRSGRFGRKGVAINFV-KSDDIRILR 159
ARGIDV QV+LV+NYD+P ++ + Y+HRIGR+GRFGR GV+INFV +
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMN 472
Query: 160 DIEQYYSTQIDEMP 201
I++Y+ I +P
Sbjct: 473 AIQEYFQRPITRVP 486
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.9 bits (156), Expect = 1e-12
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV+ + LV+NYD PN+ E Y+HR+GR+GR G GVA+ F+ + + DI +
Sbjct: 729 ARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALK 788
Query: 181 TQIDEMPMNVADL 219
+P + L
Sbjct: 789 MSKQPVPKELQTL 801
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 65.3 bits (152), Expect = 4e-12
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D+ V LVIN+DLP + + YIHR+GR+ R GR G +I+ V D+ ++ IE
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVG 378
Query: 181 TQIDE 195
T++ E
Sbjct: 379 TKLSE 383
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 63.3 bits (147), Expect = 1e-11
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
+RGIDV+ ++ V NYD P N E Y+HRIGR+GR G KG A + SD+ + R++
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAREL 484
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.1 bits (139), Expect = 1e-10
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RGID++ + +VINY+ P E+Y+HR+GR+ R GR G AI D ++L+ + + S
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
Query: 181 TQ 186
Q
Sbjct: 625 AQ 626
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 2e-10
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
RGID+ VSLV+NY++ + E Y HRIGR+GR G+ G AI F+ +D + D+
Sbjct: 578 RGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDL 631
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 58.4 bits (135), Expect = 4e-10
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 132
ARG+D + V+ V+N+D+P+N + YIHRIGR+ R G+ G A++FV
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.4 bits (135), Expect = 4e-10
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V +VINYD+P + + YIHR+GR+ R GR G +I V D+ IE
Sbjct: 346 ARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIG 405
Query: 181 TQIDE 195
++ E
Sbjct: 406 KKMQE 410
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.6 bits (133), Expect = 7e-10
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D+ V+ VINYDLP + + Y+HRIGR+GR G G A+ F ++ I +++ +
Sbjct: 491 SRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQ 550
Query: 181 TQIDEMP 201
E P
Sbjct: 551 EANQECP 557
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.8 bits (131), Expect = 1e-09
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
ARGID V +VIN+D P + YIHRIGR+GR G G A+ F +D
Sbjct: 349 ARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 56.8 bits (131), Expect = 1e-09
Identities = 23/58 (39%), Positives = 40/58 (68%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQY 174
+RGID+ ++ VINYD P ++++HR+GR+ R GR G A + V+++D L D++ +
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLF 464
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.0 bits (129), Expect = 2e-09
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V LV+ YD P + + Y+HRIGR+ R G G AI F+ + + ++ S
Sbjct: 507 ARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVS 566
Query: 181 TQIDEMPMNVADLI 222
I E P + L+
Sbjct: 567 ANILEQPNGPSGLL 580
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 53.6 bits (123), Expect = 1e-08
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
ARG+D+ +V LVIN P E Y+HRIGR+GR KG AI F D
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 52.0 bits (119), Expect = 4e-08
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
ARGIDV VINYD P + Y+HRIGR+ R GR+G A V+S +
Sbjct: 498 ARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHE 545
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.8 bits (106), Expect = 1e-06
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 123
ARGID+ V+ VI+Y +P+ ++Y+HR GR+ R GV+I
Sbjct: 450 ARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSI 490
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.8 bits (106), Expect = 1e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D V VI D P + + YIHR+GR+ R+ R G A+ + + L+ +E S
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLE---S 402
Query: 181 TQIDEMPMNVAD 216
+I +NV D
Sbjct: 403 KKIAVERINVKD 414
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 2e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI---NFVKSDDIRILRDIEQ 171
+RG+D+ V V+ D P + + + HR GR+GR GR GVAI N + ++ L + +
Sbjct: 320 SRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRVRK 379
Query: 172 YYSTQIDEMPMNVADL 219
T+ID P+ DL
Sbjct: 380 VPITRID-TPIEALDL 394
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 1e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 168
ARG+D ++ V+ P+N + YIHRIGR+GR G+ G A + + L I+
Sbjct: 354 ARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIK 409
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSDDIRILR 159
ARG+D+ V ++ YD P++ YIHR+GR+ R G KG ++ F+ ++ LR
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSELGFLR 450
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.7 bits (71), Expect = 0.024
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
G+D V VI++ P + E Y GR+GR G+ I F D
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKD 851
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.22
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 114
G+D+ +V ++I YD + + R+GR+GR RKG
Sbjct: 505 GLDIGEVDMIICYDASASPIRMLQRMGRTGR-KRKG 539
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 0.88
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGR 99
G+D+ ++I YD ++ I R+GR+GR
Sbjct: 544 GLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 138
GID+ + VI P + + GR+GR + +A+ V++
Sbjct: 623 GIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYIVET 666
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 124 NFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI*HCLYCVHYLW 255
N + S IR DIE+ YS Q+ ++ MN+ + + + +Y W
Sbjct: 37 NDMLSQWIRERMDIERQYSDQLHKLAMNMQEKN-NSSFAFNYAW 79
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 154 LRDIEQYYSTQIDEMPMNVADLI*HCLYCVHYLWWNGSC 270
+R + + +T+ E+ D+I L V+ WW GSC
Sbjct: 220 VRALYDFAATEQGELSFKKGDII-LVLESVYKDWWKGSC 257
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 216 LNITLFILCSLSLVEWILSTQGISLVKHTV 305
+++ +F L S+++V WI++ ISLV ++
Sbjct: 33 VSVPIFSLISVNIVVWIVAAIVISLVNRSL 62
>SPBC21.04 |med8|sep15|mediator complex subunit
Med8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 241 HNINNVILSQPHSLAFHLFE*SSTVQCLS 155
H N++LSQ HSL+ +L S T+Q S
Sbjct: 47 HKNFNILLSQIHSLSNNLAAHSHTLQTTS 75
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 394 IKHLCFDNTEIQILRLSYIMKY 329
++++CFD + I RLS +KY
Sbjct: 21 VQNICFDRVPLFIPRLSLTVKY 42
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 394 IKHLCFDNTEIQILRLSYIMKY 329
++++CFD + I RLS +KY
Sbjct: 21 VQNICFDRVPLFIPRLSLTVKY 42
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 394 IKHLCFDNTEIQILRLSYIMKY 329
++++CFD + I RLS +KY
Sbjct: 21 VQNICFDRVPLFIPRLSLTVKY 42
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 394 IKHLCFDNTEIQILRLSYIMKY 329
++++CFD + I RLS +KY
Sbjct: 21 VQNICFDRVPLFIPRLSLTVKY 42
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 388 HLCFDNTEIQILRLSYIMKY 329
HLC NT RL+Y++KY
Sbjct: 97 HLCTRNTWCDDNRLNYLVKY 116
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD 141
RG+ + ++ + + + Y H GR G G+ G NF+ D
Sbjct: 483 RGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIPD 528
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 409 FFFYTIKHLCFDNTEIQILRLSYIMKY 329
F Y LCFD+ E ++R ++ + +
Sbjct: 357 FIIYIQMQLCFDDLESYLIRRNHFLSF 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,307
Number of Sequences: 5004
Number of extensions: 31941
Number of successful extensions: 102
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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