Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30628
(418 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 2e-38
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 80 8e-16
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 79 1e-15
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 79 1e-15
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 79 1e-15
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 79 1e-15
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 75 2e-14
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 73 7e-14
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 68 3e-12
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 63 8e-11
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 62 1e-10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 1e-10
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 60 1e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 56 1e-08
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 8e-08
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 49 1e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 47 7e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 46 9e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 46 2e-05
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 44 5e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 42 3e-04
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 40 8e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 39 0.002
SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 37 0.006
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 37 0.006
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 31 0.38
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034) 29 1.2
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8) 29 2.0
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 29 2.0
SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10) 29 2.0
SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 27 4.7
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 27 4.7
SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 27 4.7
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 154 bits (374), Expect = 2e-38
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS
Sbjct: 297 ARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 356
Query: 181 TQIDEMPMNVADLI 222
TQIDEMPMNVADLI
Sbjct: 357 TQIDEMPMNVADLI 370
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-KSDDIRILRDIEQYY 177
ARGID + V+LV+N D+P+N E Y+HRIGR+GRFG +G+A+ +V + R LRDIE+
Sbjct: 275 ARGIDAENVNLVVNMDVPHNGETYLHRIGRAGRFGTEGMAVTYVANGKEERELRDIERSI 334
Query: 178 STQIDEMPMNVADLI*HC 231
+++ +P ++ D + C
Sbjct: 335 DVKMELLPAHIPDTLLQC 352
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HRIGRSGRFG GVAIN + DD L IE T
Sbjct: 5 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDT 64
Query: 184 QIDEMP 201
+I +P
Sbjct: 65 EIKPIP 70
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HRIGRSGRFG GVAIN + DD L IE T
Sbjct: 5 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDT 64
Query: 184 QIDEMP 201
+I +P
Sbjct: 65 EIKPIP 70
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HRIGRSGRFG GVAIN + DD L IE T
Sbjct: 353 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDT 412
Query: 184 QIDEMP 201
+I +P
Sbjct: 413 EIKPIP 418
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HRIGRSGRFG GVAIN + DD L IE T
Sbjct: 353 RGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDT 412
Query: 184 QIDEMP 201
+I +P
Sbjct: 413 EIKPIP 418
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 74.9 bits (176), Expect = 2e-14
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 7/79 (8%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNR------ELYIHRIGRSGRFGRKGVAINFVKSD-DIRILR 159
ARGIDV+QV+LVINYD+P + E Y+HRIGR+GRFG+ G+A+NF+ + I++
Sbjct: 405 ARGIDVEQVTLVINYDMPMDMQGKADFETYLHRIGRTGRFGKSGIAVNFIDGQRSMNIMK 464
Query: 160 DIEQYYSTQIDEMPMNVAD 216
IE+++ +I + + D
Sbjct: 465 KIEEHFGKKIQHLQADDVD 483
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 73.3 bits (172), Expect = 7e-14
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DIRILRDIEQYYS 180
RG+D+++V++V NYD+P + + Y+HR+ R+GRFG KG+AI FV + D + L +++ +
Sbjct: 397 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEADAKTLNEVQDRFE 456
Query: 181 TQIDEMP 201
+ E+P
Sbjct: 457 VNVGELP 463
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 68.1 bits (159), Expect = 3e-12
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DIRILRDIEQYYS 180
RG+D+++V++V NYD+P + + Y+HR+ R+GRFG KG+AI FV + D + L +++ +
Sbjct: 24 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEADAKTLNEVQDRFE 83
Query: 181 TQI 189
+
Sbjct: 84 VNV 86
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 63.3 bits (147), Expect = 8e-11
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 171
RGID++ VS VINYD+ E Y HRIGR+GR G+ G+A++F+ D + D++Q
Sbjct: 346 RGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRAGKTGIAVSFLTQSDSGVFYDLKQ 401
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 62.9 bits (146), Expect = 1e-10
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D++ ++ VINYD P + E Y+HR+GR+GR GR G ++ F+ +D R + +
Sbjct: 103 SRGLDIKDITYVINYDFPRHIEDYVHRVGRTGRAGRSGTSLTFISREDWRSAHKLIKIMV 162
Query: 181 TQIDEMPMNVADL 219
E+P + D+
Sbjct: 163 QANQEVPDFLHDM 175
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/65 (43%), Positives = 46/65 (70%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D+ QV LV+N ++P + + YIHR+GR+ R GR G+AI+ V DI ++ IE+ +
Sbjct: 308 SRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKIN 367
Query: 181 TQIDE 195
T++ E
Sbjct: 368 TKLTE 372
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 62.5 bits (145), Expect = 1e-10
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN-FVKSDDIRILRDIEQYY 177
ARG+D+ V VIN+DLP++ + Y+HRIGR+GR G KG A F++ D ++ R + +
Sbjct: 1023 ARGLDIDDVKHVINFDLPSDIDEYVHRIGRTGRIGNKGKATTFFLRGRDDKVARGLVKVL 1082
Query: 178 STQIDEMP 201
S E+P
Sbjct: 1083 SEANQEVP 1090
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 60.1 bits (139), Expect = 7e-10
Identities = 26/67 (38%), Positives = 40/67 (59%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V VIN+DLP + E Y+HRIGR+GR G G+A +F + + +++
Sbjct: 1161 ARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLATSFFNHKNKNVAKELMDILE 1220
Query: 181 TQIDEMP 201
E+P
Sbjct: 1221 ESKQEIP 1227
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D +V+ VINYDLP+ E YIHR GR+GR G G+A +F+ + D +I ++++
Sbjct: 393 SRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSFL-TLDCKIAEELKEMLE 451
Query: 181 TQIDEMP 201
+P
Sbjct: 452 VMEQPIP 458
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 56.0 bits (129), Expect = 1e-08
Identities = 24/63 (38%), Positives = 40/63 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ ++ LV+ + P + + YIHR GR+GR GR+G+ I F K +L+ +E+ +
Sbjct: 365 ARGLDIPEIDLVVQCEPPKDVDAYIHRSGRTGRAGREGICIVFYKPQQEGLLQPVERKAA 424
Query: 181 TQI 189
I
Sbjct: 425 VNI 427
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 53.2 bits (122), Expect = 8e-08
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHR 81
ARGIDV QVSLVINYDLP+NRE YIHR
Sbjct: 391 ARGIDVHQVSLVINYDLPSNRENYIHR 417
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
ARGID+ + VIN+ P +L++HR+GR R GR G A + V +D+
Sbjct: 536 ARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDE 583
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 132
ARG+D+ +V+ VI YD P++ ++HR GR+ R G +G A+ F+
Sbjct: 151 ARGVDIPEVNWVIQYDPPSSANAFVHRCGRTARIGNEGNAVVFL 194
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 48.4 bits (110), Expect = 2e-06
Identities = 18/49 (36%), Positives = 33/49 (67%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 147
ARG+D+ + VI+Y +P + E+Y+HR GR+ R +G+++ V +D+
Sbjct: 517 ARGLDIANIEHVIHYQVPKDPEVYVHRSGRTARASHEGLSVVLVGPEDL 565
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 46.8 bits (106), Expect = 7e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 19 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 138
+ VS VIN+D+P E Y+H+IGR+GR G G +I+F+ +
Sbjct: 395 EAVSKVINFDMPPTYEEYVHQIGRAGRLGATGWSISFINN 434
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 99
+RG+D VS VIN+D PN+ YIHR+GR+GR
Sbjct: 757 SRGLDTSDVSHVINFDFPNSMVDYIHRVGRTGR 789
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 13 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
D+ + VIN+D PN E Y+HRIGR+ R R G + F ++ + +++
Sbjct: 351 DISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAKEL 401
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
+RG+D+ V+ VI D + +HR+GR+ R G G +NF+ DD
Sbjct: 109 SRGLDIPNVTHVIQLDFATDAAQMLHRVGRTARAGSHGKVVNFITKDD 156
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 44.0 bits (99), Expect = 5e-05
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKSDDIRILR 159
ARG+D+ +V ++ YD ++ + YIHR+GR+ R KG A+ F+ +++ LR
Sbjct: 879 ARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEELAFLR 932
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 44.0 bits (99), Expect = 5e-05
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 16 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDE 195
+ + ++N D +E YIHR+GR+ R GR G ++ FV D+ + + IE + ++ +
Sbjct: 113 MDEADRILNMDF--EKEDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLIAKKLPQ 170
Query: 196 MP 201
P
Sbjct: 171 YP 172
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIG 87
RGID + V+LVINYD P + YIHRIG
Sbjct: 445 RGIDFKGVNLVINYDFPTSAVAYIHRIG 472
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI-RILRDIE 168
GID V VI+Y +P + E Y GR+GR G+K I + D+ RI R IE
Sbjct: 47 GIDKGDVRYVIHYSMPKSLEGYYQECGRAGRDGKKAECILYYSYGDMHRIRRMIE 101
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 132
RG+D +++ V ++P N E Y+H GR GR GR G A V
Sbjct: 490 RGLDFKELDHVYLMEVPKNVEEYLHLCGRVGRQGRPGTATTVV 532
>SB_36976| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 108
G+D+ V +I+Y +P+ E Y+ IGR GR GR
Sbjct: 2 GVDIPDVDHIIHYGIPSEVEHYVQEIGRGGRDGR 35
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 37.1 bits (82), Expect = 0.006
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 108
G+D V +I+Y++P + E Y+ IGR+GR G+
Sbjct: 851 GLDKSDVRAIIHYNMPKSFESYVQEIGRAGRDGK 884
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 135
G+D+ V +I++ +P+ E Y+ IGR GR GR A + K
Sbjct: 324 GVDIPDVDHIIHFGIPSEVEHYVQEIGRGGRDGRLCYATLYYK 366
>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 120
G+D + V VI+Y + E YI GR+GR G VA
Sbjct: 359 GVDCKGVKRVIHYGPSKSVEAYIQETGRAGRDGSNSVA 396
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 31.1 bits (67), Expect = 0.38
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 147
GID V VI++ + E Y GR+GR ++ I F + DI
Sbjct: 365 GIDKSNVRFVIHHSFSKSMENYYQESGRAGRDEKRASCIVFYRPFDI 411
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.7 bits (66), Expect = 0.50
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 186
G+D V V ++ LP + E Y GR+GR G+ F S I++ I YS +
Sbjct: 311 GVDKGDVRFVAHWSLPQSMEGYYQESGRAGRDGQPSYCRLFY-SRLIQMYGVILSIYSAE 369
Query: 187 IDEM 198
D++
Sbjct: 370 RDQV 373
>SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034)
Length = 144
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
GID + V V+ + +P E Y GR+GR G V + + +D
Sbjct: 90 GIDQKNVRFVVPHIMPECVEHYYEEAGRAGRDGDPAVCTLYNRFED 135
>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI-RILRDIEQY 174
GID + V I++ N E +I GR+GR + + K + + RDI++Y
Sbjct: 241 GIDCKGVHRTIHFGPSKNCEAFIQETGRAGRDWKSSFSYLLYKGIMLNHVERDIKEY 297
>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
Length = 295
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 52 PNNRELYIHRIGRSGRFGRKGVAINFVKSD 141
PN R + HR R+ GR+G IN +K D
Sbjct: 240 PNLRVAHHHRYHRAYCVGRRGQTINLIKQD 269
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 186
G+DV + + V+ +D P N Y+ GR+ R + D ++E+Y T+
Sbjct: 157 GLDVPKCNFVVRFDFPQNFRSYVQSKGRA-RAKNSAFIVLVEDKDSEWAGLEVERYQETE 215
>SB_1038| Best HMM Match : Helicase_C (HMM E-Value=1.1e-10)
Length = 435
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI-RILRDIEQY 174
GID + V +++ N E +I G +GR G+ + K + + RDI++Y
Sbjct: 272 GIDCKGVHRTMHFGPSKNCEAFIQETGHAGRDGKSSFSYLLYKGIMLNHVERDIKEY 328
>SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 216 LNITLFILCSLSLVEWILST 275
L+ITLFIL + SLV W+ ST
Sbjct: 210 LSITLFILIATSLVTWMPST 229
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 10 IDVQQVSLVINYDLPNNRELYIHRIGRS-GRFGRKGVAINFVKS 138
+D+ VI D NNR ++R G G+FGR+G + KS
Sbjct: 754 VDIDNRGRVIICDNGNNRVQVLNRNGGFIGKFGREGTGNGYFKS 797
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGR 90
++G+D + VIN+D+P + E Y+ G+
Sbjct: 148 SKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGR 90
++G+D + VIN+D+P + E Y+ G+
Sbjct: 148 SKGLDFPDIQHVINFDMPEDIENYVLLCGQ 177
>SB_20772| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 315
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 195 NANECG*LNITLFILCSLSLVEWILST 275
N NE L++TL IL + SLV W+ ST
Sbjct: 196 NRNENQRLSMTLVILIATSLVTWLPST 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,246,475
Number of Sequences: 59808
Number of extensions: 231083
Number of successful extensions: 464
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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