Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30628
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       60   1e-11
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 60.1 bits (139), Expect = 1e-11
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +1

Query: 1   ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 159
           ARG+D++ VS VINYDLP   + Y+HRIGR+GR G +G A +F   ++   LR
Sbjct: 512 ARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLR 564


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRST 85
           PD++ +N  DG+   T +T++T
Sbjct: 113 PDIVLYNNADGNFEVTLATKAT 134


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRST 85
           PD++ +N  DG+   T +T++T
Sbjct: 109 PDIVLYNNADGNFEVTLATKAT 130


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 320 VPLAFHRVLNQANTL 276
           + L FH +L +ANTL
Sbjct: 341 ITLTFHEILKRANTL 355


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRST 85
           PD++ +N  DG+   T  T++T
Sbjct: 113 PDIVLYNNADGNYEVTLMTKAT 134


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRST 85
           PD++ +N  DG+   T  T++T
Sbjct: 118 PDIVLYNNADGNYEVTLMTKAT 139



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 TAKLYNEVLVNVPLAFHRVLNQANTL 276
           T +LY+++L N       V+N   TL
Sbjct: 34  TKRLYDDLLSNYNRLIRPVMNNTETL 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRS 88
           PD++ +N  DG+   T  T++
Sbjct: 105 PDIVLYNNADGEYGVTTMTKA 125


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -2

Query: 210 HIHWHFIY 187
           H HWH +Y
Sbjct: 209 HWHWHLVY 216


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 150 PDVI*FNEVDGDTLTTESTRS 88
           PD++ +N  DG+   T  T++
Sbjct: 105 PDIVLYNNADGNYEVTIMTKA 125


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 331 TSLYNLAVISVFLYYQNINVL 393
           +S Y   +I VFLYY     L
Sbjct: 350 SSFYIPCIIMVFLYYNIFKAL 370


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 150 PDVI*FNEVDGD 115
           PD++ FN  DG+
Sbjct: 111 PDIVLFNNADGN 122


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 307 FTVCLTRLIPWVDK 266
           F +C   L+ W DK
Sbjct: 194 FVICFPPLVGWKDK 207


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 87  TNSVNVQLTIVGQVIVYNQG 28
           T  VN+  +IVGQ+ V  QG
Sbjct: 127 TWEVNILKSIVGQLQVDTQG 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,788
Number of Sequences: 438
Number of extensions: 2268
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)