Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30628
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 154 3e-38
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 113 3e-26
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 113 5e-26
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 113 6e-26
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 112 1e-25
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 81 4e-16
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 81 4e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 81 4e-16
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 79 9e-16
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 79 9e-16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 76 8e-15
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 76 8e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 74 3e-14
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 74 4e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 74 4e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 71 2e-13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 71 2e-13
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 69 2e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 68 2e-12
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 67 4e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 67 4e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 65 2e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 65 2e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 3e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 3e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 64 3e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 63 6e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 62 1e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 62 2e-10
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 61 3e-10
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 61 3e-10
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 61 3e-10
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 61 3e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 60 6e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 1e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 59 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 57 4e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 57 4e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 57 4e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 57 4e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 4e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 57 4e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 1e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 2e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 55 2e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 54 3e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 5e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 54 5e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 8e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 49 1e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 48 2e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 3e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 3e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 4e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 6e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 47 6e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 47 6e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 1e-05
At4g37020.1 68417.m05244 expressed protein 45 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 44 3e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 44 5e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 3e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 40 7e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 9e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 39 0.002
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 31 0.41
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 31 0.41
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 31 0.41
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 30 0.72
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 1.7
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 2.9
At1g72270.1 68414.m08355 expressed protein 28 2.9
At1g26810.1 68414.m03267 galactosyltransferase family protein co... 27 3.8
At5g26810.1 68418.m03199 pectinesterase family protein contains ... 27 5.1
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 27 5.1
At3g49060.1 68416.m05360 protein kinase family protein / U-box d... 27 6.7
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 27 6.7
At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,... 27 6.7
At3g21970.1 68416.m02772 receptor-like protein kinase-related co... 26 8.9
At1g23560.1 68414.m02964 expressed protein contains Pfam profile... 26 8.9
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 26 8.9
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 154 bits (373), Expect = 3e-38
Identities = 73/74 (98%), Positives = 74/74 (100%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI+ILRDIEQYYS
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYS 394
Query: 181 TQIDEMPMNVADLI 222
TQIDEMPMNVADLI
Sbjct: 395 TQIDEMPMNVADLI 408
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 113 bits (273), Expect = 3e-26
Identities = 52/74 (70%), Positives = 63/74 (85%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVIN+DLP E Y+HRIGRSGRFGRKGVAINFV DD R+L DI+++Y+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398
Query: 181 TQIDEMPMNVADLI 222
++E+P NVADL+
Sbjct: 399 VVVEELPSNVADLL 412
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 113 bits (272), Expect = 5e-26
Identities = 52/74 (70%), Positives = 63/74 (85%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVIN+DLP E Y+HRIGRSGRFGRKGVAINFV DD R+L DI+++Y+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYN 398
Query: 181 TQIDEMPMNVADLI 222
++E+P NVADL+
Sbjct: 399 VVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 113 bits (271), Expect = 6e-26
Identities = 50/74 (67%), Positives = 64/74 (86%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQQVSLVIN+DLP E Y+HRIGRSGRFGRKGVAINF+ S+D R++ DI+++Y+
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYN 400
Query: 181 TQIDEMPMNVADLI 222
++E+P NVADL+
Sbjct: 401 VVVEELPSNVADLL 414
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 112 bits (269), Expect = 1e-25
Identities = 54/74 (72%), Positives = 64/74 (86%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGIDVQ VS VINYD+PNN ELYIHRIGR+GRFGR+GVAINFVKS D++ L+DIE++Y
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYG 381
Query: 181 TQIDEMPMNVADLI 222
T+I EMP ADL+
Sbjct: 382 TKIREMP---ADLV 392
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 80.6 bits (190), Expect = 4e-16
Identities = 32/70 (45%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYS 180
RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D +L +++ +
Sbjct: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 409
Query: 181 TQIDEMPMNV 210
I E+P +
Sbjct: 410 VDIKELPEQI 419
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 80.6 bits (190), Expect = 4e-16
Identities = 32/70 (45%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYS 180
RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D +L +++ +
Sbjct: 267 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 326
Query: 181 TQIDEMPMNV 210
I E+P +
Sbjct: 327 VDIKELPEQI 336
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 80.6 bits (190), Expect = 4e-16
Identities = 32/70 (45%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYS 180
RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S D +L +++ +
Sbjct: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 409
Query: 181 TQIDEMPMNV 210
I E+P +
Sbjct: 410 VDIKELPEQI 419
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 79.4 bits (187), Expect = 9e-16
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HR+GRSGRFG G+A+N + +D L IEQ T
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 489
Query: 184 QIDEMPMNVADLI 222
+I ++P ++ I
Sbjct: 490 EIKQIPPHIDQAI 502
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 79.4 bits (187), Expect = 9e-16
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P N E Y+HR+GRSGRFG G+A+N + +D L IEQ T
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 489
Query: 184 QIDEMPMNVADLI 222
+I ++P ++ I
Sbjct: 490 EIKQIPPHIDQAI 502
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 8e-15
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P E Y+HR+GRSGRFG G+A+N V +D + EQ T
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGT 482
Query: 184 QIDEMPMNVADLI 222
+I +P N+ I
Sbjct: 483 EIKPIPSNIDQAI 495
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 8e-15
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P E Y+HR+GRSGRFG G+A+N V +D + EQ T
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGT 482
Query: 184 QIDEMPMNVADLI 222
+I +P N+ I
Sbjct: 483 EIKPIPSNIDQAI 495
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 74.1 bits (174), Expect = 3e-14
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+Q V++VIN+D P E Y+HR+GRSGRFG G+A+N V +D + EQ T
Sbjct: 453 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGT 512
Query: 184 QIDEMPMNVADLI*HCLYC 240
+I +P LI +YC
Sbjct: 513 EIKPIP----SLIDKAIYC 527
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 73.7 bits (173), Expect = 4e-14
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV+++ LV+N+D PN+ E Y+HR+GR+GR GRKG A+ F+ DD + D+ + +
Sbjct: 675 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVK--A 732
Query: 181 TQIDEMPM 204
++ E P+
Sbjct: 733 LELSEQPV 740
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 73.7 bits (173), Expect = 4e-14
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV+++ LV+N+D PN+ E Y+HR+GR+GR GRKG A+ F+ DD + D+ + +
Sbjct: 837 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVK--A 894
Query: 181 TQIDEMPM 204
++ E P+
Sbjct: 895 LELSEQPV 902
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 71.3 bits (167), Expect = 2e-13
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV V L+I+Y+LPNN E ++HR GR+GR G+KG AI D R ++ IE+
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468
Query: 181 TQIDEMP 201
++ E+P
Sbjct: 469 SRFTELP 475
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 71.3 bits (167), Expect = 2e-13
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV V LVI+Y+LPNN E ++HR GR+GR G+KG AI D R ++ IE+
Sbjct: 421 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVG 480
Query: 181 TQIDEMP 201
++ +E+P
Sbjct: 481 SRFNELP 487
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 68.5 bits (160), Expect = 2e-12
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D + ++ VINYD P++ YIHRIGRSGR GR G AI F D+ LR+I
Sbjct: 441 ARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMM 500
Query: 181 TQIDEMPMNVADL 219
+ E+P + L
Sbjct: 501 SSGCEVPSWIMSL 513
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV+ + V+NYD PN E YIHRIGR+GR G KG+A F D+ + R++ +
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQ 530
Query: 181 TQIDEMPMNVADLI 222
+P ++ L+
Sbjct: 531 EAGQVVPPTLSALV 544
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 67.3 bits (157), Expect = 4e-12
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 9/75 (12%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPN-------NRELYIHRIGRSGRFGRKGVAINFVKSD--DIRI 153
ARG D Q+V+LV+NY+LP + E+Y+HR+GR+GRFGRKG N + D D +
Sbjct: 401 ARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEV 460
Query: 154 LRDIEQYYSTQIDEM 198
+ IE+Y+ + E+
Sbjct: 461 MEKIEKYFEANVKEI 475
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.3 bits (157), Expect = 4e-12
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID+ V+ VINYD+P + E+Y HRIGR+GR G+ GVA +F+ D + D++Q
Sbjct: 638 RGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQ 697
Query: 184 QIDEMPMNVA 213
+P +A
Sbjct: 698 SNSAVPPELA 707
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 64.9 bits (151), Expect = 2e-11
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D+ V +VINYD+P N + YIHR+GR+ R GR GV I+ V ++ IE+
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIG 380
Query: 181 TQIDEMP 201
++ E P
Sbjct: 381 KKLPEYP 387
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.9 bits (151), Expect = 2e-11
Identities = 24/57 (42%), Positives = 41/57 (71%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 171
+RG+D+ V LVINYD+P + Y+HR+GR+ R GR G+A++ + D++++ IE+
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 3e-11
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V+ V+N+DLPN+ + Y+HRIGR+GR G+ G+A F ++ ++ R + +
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528
Query: 181 TQIDEMP 201
E+P
Sbjct: 529 EANQEVP 535
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 3e-11
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V+ V+N+DLPN+ + Y+HRIGR+GR G+ G+A F ++ ++ R + +
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528
Query: 181 TQIDEMP 201
E+P
Sbjct: 529 EANQEVP 535
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D++ + +VINYD P E Y+HRIGR+GR G GVA F D + D+ +
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Query: 181 TQIDEMPMNVADL 219
++P V D+
Sbjct: 800 GANQQVPPQVRDI 812
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 63.3 bits (147), Expect = 6e-11
Identities = 28/73 (38%), Positives = 43/73 (58%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+DV+ + +V+NYD PN E Y+HRIGR+GR G G+A F D + D+ +
Sbjct: 534 ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593
Query: 181 TQIDEMPMNVADL 219
++P V ++
Sbjct: 594 GANQKVPPQVREM 606
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 62.1 bits (144), Expect = 1e-10
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
+RG+D+ V LVI+Y+LPN+ E ++HR GR+GR G++G AI S R +R +E+
Sbjct: 411 SRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVG 470
Query: 181 TQIDEM-PMNVADLI 222
+ + P V DL+
Sbjct: 471 CHFEFISPPTVGDLL 485
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 61.7 bits (143), Expect = 2e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V+ V+N+DLPN+ + Y+HRIGR+GR G+ G+A F + + R + +
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQ 538
Query: 181 TQIDEMP 201
E+P
Sbjct: 539 EANQEVP 545
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 61.3 bits (142), Expect = 3e-10
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-------KSDDIRILR 159
ARG+DV+ + V+NYD PN E Y+HRIGR+GR G G A F SD I+IL
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 160 DIEQYYSTQIDEM 198
Q QI EM
Sbjct: 523 GANQRVPPQIREM 535
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 61.3 bits (142), Expect = 3e-10
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-------KSDDIRILR 159
ARG+DV+ + V+NYD PN E Y+HRIGR+GR G G A F SD I+IL
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 160 DIEQYYSTQIDEM 198
Q QI EM
Sbjct: 523 GANQRVPPQIREM 535
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 61.3 bits (142), Expect = 3e-10
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-------KSDDIRILR 159
ARG+DV+ + V+NYD PN E Y+HRIGR+GR G G A F SD I+IL
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 160 DIEQYYSTQIDEM 198
Q QI EM
Sbjct: 523 GANQRVPPQIREM 535
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
ARG+DV+ V VINYD P + E Y+HRIGR+GR G KG A F + R +++
Sbjct: 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.1 bits (139), Expect = 6e-10
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V+ V+N+DLPN+ + Y+HRIGR+GR G G+A F ++ + + + +
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQ 525
Query: 181 TQIDEMP 201
E+P
Sbjct: 526 EANQEVP 532
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARGID+ + VIN+D P ++++HR+GR+ R GR G A +FV +D+ + D+ + S
Sbjct: 332 ARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLS 391
Query: 181 TQIDEMP 201
+ P
Sbjct: 392 KPVRPAP 398
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.8 bits (136), Expect = 1e-09
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRI-LRDIEQYY 177
++G+D + VINYD+P E Y+HRIGR+GR G+ G+A F+ + I L D++
Sbjct: 409 SKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLL 468
Query: 178 STQIDEMPMNVADL 219
+P +A+L
Sbjct: 469 QEAKQRIPPVLAEL 482
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-KSDDIRILRDIEQYY 177
++G+D + VINYD+P E Y+HRIGR+GR G+ G+A F+ K+ L D++
Sbjct: 458 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 517
Query: 178 STQIDEMPMNVADL 219
+P +A+L
Sbjct: 518 QEAKQRIPPVLAEL 531
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/73 (36%), Positives = 46/73 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D VSLV+ LP++RE YIHR+GR+GR G++G + + +L E+Y+
Sbjct: 399 ARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG--------EGVLLLAPWEEYFL 450
Query: 181 TQIDEMPMNVADL 219
+ + ++P+ + L
Sbjct: 451 SSVKDLPITKSSL 463
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/73 (36%), Positives = 46/73 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D VSLV+ LP++RE YIHR+GR+GR G++G + + +L E+Y+
Sbjct: 701 ARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG--------EGVLLLAPWEEYFM 752
Query: 181 TQIDEMPMNVADL 219
+ + ++P+ + L
Sbjct: 753 SSVKDLPITKSPL 765
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D+ V VINY P + Y+HR+GR+ R GR+G A+ FV D +L+ I +
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVG 532
Query: 181 TQI 189
+++
Sbjct: 533 SKL 535
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D +V +I YD P Y+HR+GR+ R G KG A+ F++ +I L++++++ +
Sbjct: 410 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGA 469
Query: 181 TQIDEMPMNVAD 216
+ + M V D
Sbjct: 470 SLTEYPLMKVLD 481
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 129
ARG+D+ V +VINY P E Y+HRIGR+GR G+KGVA F
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.0 bits (129), Expect = 1e-08
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 171
ARG+DV + LV+N +LP + Y HR GR+GR GRKG + + + I++ +E+
Sbjct: 468 ARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEK 524
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 2e-08
Identities = 27/73 (36%), Positives = 45/73 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG+D V+LV+ LP +RE YIHR+GR+GR G++G + I +L E+Y+
Sbjct: 373 ARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEG--------EGILLLAPWEEYFL 424
Query: 181 TQIDEMPMNVADL 219
+ + ++P+ + L
Sbjct: 425 SSLKDLPITKSPL 437
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.8 bits (126), Expect = 2e-08
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDIRILRDIEQYY 177
ARG+D++ + V+NYD+ + ++++HRIGR+GR G R GVA V + R ++
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSL 593
Query: 178 STQIDEMPMNVADL 219
+P + DL
Sbjct: 594 VAAGQNVPPELTDL 607
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.4 bits (125), Expect = 3e-08
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 183
RGID ++V VIN+D+P + YIHRIGR+GR G +++ + D++ DI+ + ++
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLAS 457
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 53.6 bits (123), Expect = 5e-08
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
RG+D+ V VI +D+P+ + YIH IGR+ R G KG AI FV DD + D+
Sbjct: 420 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 473
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 53.6 bits (123), Expect = 5e-08
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 165
RG+D+ V VI +D+P+ + YIH IGR+ R G KG AI FV DD + D+
Sbjct: 283 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 336
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 49.6 bits (113), Expect = 8e-07
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 138
ARG+D+ V L+I + P E YIHR GR+GR G GVA+ S
Sbjct: 407 ARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDS 452
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG++ V+LVI +P++RE YIHR+GR+GR G+ G + + ++ E+Y+
Sbjct: 648 ARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG--------EGLLLIAPWERYFL 699
Query: 181 TQIDEMPM 204
++ ++P+
Sbjct: 700 DELKDLPL 707
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 48.4 bits (110), Expect = 2e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 132
ARG+D+ + V+ YD P + +++IHR+GR+ R R+G AI F+
Sbjct: 330 ARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFL 373
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
ARGID++ V +I+Y LP++ E+Y+HR GR+ R G +I ++ ++
Sbjct: 563 ARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNE 610
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/68 (33%), Positives = 42/68 (61%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 180
ARG++ V+LVI +P++RE YIHR+GR+GR G+ G + ++ E+Y+
Sbjct: 695 ARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG--------KGLLLIAPWERYFL 746
Query: 181 TQIDEMPM 204
++ ++P+
Sbjct: 747 DELKDLPL 754
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1
Query: 4 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIR 150
RG+DV+ V+ VINYD+P + +IHR GR+ R G+ G + + ++R
Sbjct: 390 RGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVR 438
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR---FGRKGVAINFVKSDDIRILRDIEQ 171
ARGID+ + + + N+DLP Y+HR GR+GR RK + N + S++ +L+ E
Sbjct: 402 ARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYEN 461
Query: 172 YYSTQIDEM 198
+EM
Sbjct: 462 ELMFSCEEM 470
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR---FGRKGVAINFVKSDDIRILRDIEQ 171
ARGID+ + + + N+DLP Y+HR GR+GR RK + N + S++ +L+ E
Sbjct: 245 ARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYEN 304
Query: 172 YYSTQIDEM 198
+EM
Sbjct: 305 ELMFSCEEM 313
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 132
ARG+D+ + V+ YD P + ++ HR GR+ R GR+G AI F+
Sbjct: 339 ARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFL 382
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAINFVKSDDIRILR 159
ARG+D+ V +I YD P+ YIHR+GR+ R G KG A+ + ++++ +R
Sbjct: 395 ARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIR 448
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +1
Query: 31 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNV 210
++INY+LP +E Y RI G G+ IN V ++ L+ +E+ I EMP+N+
Sbjct: 151 VLINYELPTKKETYTRRITTCLASG--GIVINMVVGGEVTTLKSLEESSGILIAEMPINI 208
Query: 211 ADLI 222
++++
Sbjct: 209 SEIL 212
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAINFVKSDDIRILR 159
ARG+D V ++ YD P+N YIHR+GR+ R G KG A+ + +++ ++
Sbjct: 461 ARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQ 514
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 43.6 bits (98), Expect = 5e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 171
ARG+D+ V V+ +D P N Y+HR GR+ R G KG + V D + IE+
Sbjct: 433 ARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEE 488
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 ARGIDVQQ-VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQ 171
ARG+D + V V+ D P + YIHR+GR+ RF +G ++ F+ + +++ +++
Sbjct: 378 ARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQE 435
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 186
G+D V VI++ +P + E Y+ IGR+GR GR F +D LR + +S
Sbjct: 549 GLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLA--HSDG 606
Query: 187 IDE 195
+DE
Sbjct: 607 VDE 609
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.5 bits (88), Expect = 9e-04
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKSDDIRILRDI 165
+RGID V V+ +D P + Y+ R+GR+ R R KG A FV + + R I
Sbjct: 705 SRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRI 760
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 1 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 114
ARG+DV VS VI D ++ ++HRIGR+ R G+ G
Sbjct: 484 ARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYG 521
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIR----ILRDIEQY 174
GID + V +V ++++P + E + GR+GR ++ + DD + +LR+ E
Sbjct: 226 GIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENK 285
Query: 175 YSTQIDEMPMNVADLI*HC 231
S+ + + ++ +C
Sbjct: 286 KSSSSKKPTSDFEQIVTYC 304
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIR----ILRDIEQY 174
GID + V +V ++++P + E + GR+GR ++ + DD + +LR+ E
Sbjct: 319 GIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENK 378
Query: 175 YSTQIDEMPMNVADLI*HC 231
S+ + + ++ +C
Sbjct: 379 KSSSSKKPTSDFEQIVTYC 397
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 111
G++ + L+++ +LP + Y HR GR R GRK
Sbjct: 678 GLEDAECDLMVDLELPTDAVHYAHRAGRMRRPGRK 712
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRS 93
G+D+Q LVI YDLP +I GR+
Sbjct: 584 GLDIQTCCLVIRYDLPETVTSFIQSRGRA 612
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGR 99
G+D+ +V LVI +D + I R+GR+GR
Sbjct: 540 GLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 105
GID + V +I+Y + E Y GR+GR G
Sbjct: 560 GIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDG 592
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -2
Query: 171 LFNVSQDPDVI*FNEVDGDTLTT--ESTRSTN---SVNVQLTIVGQVIVYNQGYLL 19
L++ + D D I +E +TL T E + N SV I+G+VIVY Q +LL
Sbjct: 2547 LYSEANDSDQIVLSETKPETLPTLLEYLKKRNLQGSVTNSEHIIGEVIVYLQKHLL 2602
>At1g26810.1 68414.m03267 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 643
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3
Query: 149 LMSSDLTKLMATPLRPNRPDLPIL*MYNSRLLG 51
L+ S L PL P PD PI+ YN RLLG
Sbjct: 194 LVGSFRIDLTGQPL-PGEPDPPIIVHYNVRLLG 225
>At5g26810.1 68418.m03199 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 293
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -1
Query: 295 LTRLIPWVDKIHS--TKDNEHNINNVI 221
++R +PW+DK+HS TK + +I+N I
Sbjct: 256 MSRRVPWIDKLHSFYTK-QQFSISNFI 281
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 186
GIDV + + ++ P + + GRSGR + +A+ + L ++QYY +
Sbjct: 642 GIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVY------VAFLGPLDQYYMSF 695
Query: 187 IDEM 198
D++
Sbjct: 696 PDKL 699
>At3g49060.1 68416.m05360 protein kinase family protein / U-box
domain-containing protein contains Pfam profile: PF00069
Eukaryotic protein kinase domain
Length = 805
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +1
Query: 67 LYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI 222
LY+HR R+ + K + K D++++ +E+ ++DE+ + L+
Sbjct: 47 LYVHRTARAASWTHKKLVGGSFKKHDVKVIERVEK---PKVDELMNSYLQLL 95
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 144
GID V VI+ L E Y GR+GR G + I + D
Sbjct: 491 GIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKD 536
>At2g01470.1 68415.m00070 St12p protein (ST12p) / SEC12p protein,
putative 99.8% identical to St12p protein (GI:166878)
{Arabidopsis thaliana}
Length = 393
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 168 FNVSQDPDVI*FNEVDGDTLTTESTR 91
FNVS D ++ ++GD L ESTR
Sbjct: 291 FNVSADGKLLAIGTLEGDVLILESTR 316
>At3g21970.1 68416.m02772 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 4 (GI:13506745) and receptor-like protein kinase
5 (GI:13506747) [Arabidopsis thaliana]
Length = 264
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -2
Query: 207 IHWHFIYLSRVVLFNVSQDPDVI 139
+ + + Y+S VV + VS+DP+++
Sbjct: 68 LRYGYAYVSNVVAYKVSKDPNIV 90
>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 332
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 127 FVKSDDIRILRDIEQYYSTQ--IDEMPMNVADLI*HCLYCVHYLWWNGSC 270
F D+ R ++I++ S + IDE P ++ + +LWW+G+C
Sbjct: 125 FTHPDNKRYFKNIKENISRKVLIDEGPKQTVEVKQAAAW--KFLWWDGTC 172
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 7 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 105
G+D++Q ++V+ +DL YI GR+ + G
Sbjct: 736 GLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPG 768
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,306
Number of Sequences: 28952
Number of extensions: 154095
Number of successful extensions: 418
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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