Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30627
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   4.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   6.0  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = -3

Query: 451 ATSYTMNSLYSSVLFSALSTGVPSGT---MSPSGNSLFIFGSGSVRPTPHTECVPDGALE 281
           + +YT  S + + LF   S   P  T   ++  GN      S   RP P T   P G+L 
Sbjct: 111 SAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDS--FRPLPETPVSPGGSLV 168

Query: 280 KP---SALTHSLYSRERPHTAT 224
            P     L  S+ S   P++ T
Sbjct: 169 HPLPRPPLPSSVSSHSSPYSTT 190


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 177 LGDHVRKVYALAEHVARDWSFGRRNTK 97
           LG H  +V  + EHV  DW  G  N K
Sbjct: 159 LGFHAGEVIIVLEHVNNDWWRGELNGK 185


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 29  STTAASCGTAPAPPTSPA 82
           STT+AS  +APAPP  P+
Sbjct: 123 STTSASPPSAPAPPLPPS 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,880
Number of Sequences: 5004
Number of extensions: 57438
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)