Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30627
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4467| Best HMM Match : PARP (HMM E-Value=0)                        126   2e-29
SB_2975| Best HMM Match : PARP (HMM E-Value=0)                        123   1e-28
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    82   4e-16
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  40   0.001
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.042
SB_23335| Best HMM Match : PARP (HMM E-Value=6.8e-05)                  33   0.22 
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     31   0.68 
SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)                     30   2.1  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  29   2.8  
SB_10435| Best HMM Match : PRAI (HMM E-Value=1.7)                      29   2.8  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       28   6.4  
SB_52852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)                  28   8.4  
SB_22773| Best HMM Match : Ribosomal_L13 (HMM E-Value=7.5)             28   8.4  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)                     28   8.4  

>SB_4467| Best HMM Match : PARP (HMM E-Value=0)
          Length = 293

 Score =  126 bits (304), Expect = 2e-29
 Identities = 62/99 (62%), Positives = 73/99 (73%)
 Frame = +1

Query: 19  FKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCCT 198
           F  + NR LLWHGSR TN+AGI+ QGLRIAPPEAPVTGYMFGKGIYFADM SKSANYC  
Sbjct: 79  FLDVGNRMLLWHGSRLTNWAGILKQGLRIAPPEAPVTGYMFGKGIYFADMSSKSANYCFA 138

Query: 199 TRNNPVGLMLLCEVALGNIRSVSMLKVSLKPRPARIPCG 315
           TR+   GL+LL EV+LG     S + ++     A++P G
Sbjct: 139 TRSKNTGLVLLSEVSLGK----SNVLLTADYNAAKLPAG 173


>SB_2975| Best HMM Match : PARP (HMM E-Value=0)
          Length = 174

 Score =  123 bits (297), Expect = 1e-28
 Identities = 57/83 (68%), Positives = 66/83 (79%)
 Frame = +1

Query: 19  FKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCCT 198
           F  + NR LLWHGSR TN+AGI+ QGLRIAPPEAPVTGYMFGKGIYFADM SKSANYC  
Sbjct: 79  FLDVGNRMLLWHGSRLTNWAGILKQGLRIAPPEAPVTGYMFGKGIYFADMSSKSANYCFA 138

Query: 199 TRNNPVGLMLLCEVALGNIRSVS 267
           TR+   GL+LL EV+ G+ +  +
Sbjct: 139 TRSKNTGLVLLSEVSDGDAQGAA 161


>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 34/39 (87%), Positives = 39/39 (100%)
 Frame = +1

Query: 10  YKPFKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPV 126
           +KPFK+LHNR+LLWHGSRTTN+AGI+SQGLRIAPPEAPV
Sbjct: 683 FKPFKQLHNRQLLWHGSRTTNYAGILSQGLRIAPPEAPV 721


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 49   WHGSRTTNFAGIISQGLRIAPPEAPVTGY-MFGKGIYFADMVSKSANYCCTTRNNPVGLM 225
            +HG+     AGI   G R+     P     M+G+GIYFA   SKSA    T  +N    +
Sbjct: 1448 FHGTSDECVAGITRDGFRLPDQNPPPDKRGMYGQGIYFATDSSKSAQGIYTKGSNK---L 1504

Query: 226  LLCEVALGNIRSVSMLKVSLKPRPARIPCG 315
            L+C+V LG  RS+ + K       A++  G
Sbjct: 1505 LVCQVLLG--RSMIVRKADRNMDKAKLRKG 1532


>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 49  WHGSRTTNFAGIISQGLRIAPPEAPVTGY-MFGKGIYFADMVSKSANYCCTTRNNPVGLM 225
           +HG+     AGI   G R+     P     M+G+GIYFA   SKSA    T  +N    +
Sbjct: 268 FHGTSDECVAGITRDGFRLPDQNPPPDKRGMYGQGIYFATDSSKSAQGIYTKGSNK---L 324

Query: 226 LLCEVALG 249
           L+C+V LG
Sbjct: 325 LVCQVLLG 332


>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +1

Query: 34   NRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANY 189
            N R+L+HGS   N   I+ +G           G MFG GIYFA+  SKS  Y
Sbjct: 973  NERMLFHGSPFIN--AIVQKGF---DERHAYIGGMFGAGIYFAENSSKSNQY 1019


>SB_23335| Best HMM Match : PARP (HMM E-Value=6.8e-05)
          Length = 245

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 1   DKRYKPFKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKS 180
           DK  K    ++N + L+HG+  +N   I +QG           G  +G G+YFA   S S
Sbjct: 5   DKMDKDNVGINNEKSLFHGTDGSNVTHINTQGFN-RSFAGKARGTAYGNGVYFAANASYS 63

Query: 181 ANY 189
             Y
Sbjct: 64  EGY 66


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 108 AARSSSHGLHVRQG-HILCGHGLQVCQLLLHHQKQPRRP 221
           A++S S G +++Q  H+L GH   +C  +   Q+Q RRP
Sbjct: 535 ASKSHSVGANIQQALHLLKGHNPPLCDAVSRVQRQHRRP 573


>SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)
          Length = 252

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 28/117 (23%), Positives = 51/117 (43%)
 Frame = -3

Query: 430 SLYSSVLFSALSTGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHSLY 251
           SL ++   S ++TG      +PSGN++ + GSG       T  VP G +  P+ +T  + 
Sbjct: 13  SLAATGQLSIMATGRSLALATPSGNAMAL-GSG----VKDTGLVPSGTVVNPTTVT--MA 65

Query: 250 SRERPHTAT*GRRGCFWWCSSSWQTWRPCPQSICPCRTCSP*LELRAAQYEDLVK*C 80
           + ++ H      +    W    W +W+P       CR C P ++    +  +  + C
Sbjct: 66  TPQQSHL-----QSMLSW--EPWLSWQPMA---IRCRICWPAMDREECRRNEKYRNC 112


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 136 MFGKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALG 249
           M G GIYFAD  S SA Y           ML+ +VALG
Sbjct: 406 MLGHGIYFADRASTSAKYSSPGMLGS-RFMLVNKVALG 442


>SB_10435| Best HMM Match : PRAI (HMM E-Value=1.7)
          Length = 379

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = -2

Query: 464 HFDLSHVVHDELVVQQRAVLRPVDGRPERHNESVGQFLIHFRVRLSSTDAPHGMRAGRGF 285
           H D+  ++ +EL  +   +  P+D   + HN+ V  ++I+  +R  +      +R GR  
Sbjct: 219 HDDVKRMIAEELTTKLVGMALPIDSVVDLHNDLVSDYIINNELR--TLFGSLSLRCGR-- 274

Query: 284 RETFSIDTLLIFPR 243
               ++D L + P+
Sbjct: 275 LMALAVDALHVAPK 288


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 232 CEVALGNIRSVSMLKVSLKPRPARIPCG 315
           C      +R  S+L  + +PRP  +PCG
Sbjct: 641 CNSVTATVRPPSVLVTTARPRPQGVPCG 668


>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 605 NSRKSCFTRILKKTFFFIFLSIVSKKKNYIYN 700
           NS KS FTR  ++TFF +F    S KK YI++
Sbjct: 54  NSVKSQFTRDFRETFFSLFNEEESDKK-YIFD 84


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 85  ISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTTRNNPV 216
           +  GL    PEAP  G  F  G  + D+V    +   T   NPV
Sbjct: 307 VENGLTCGIPEAPENGVRFYNGTGYNDVVRYQCDDNYTMTGNPV 350


>SB_52852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 318 VGRTEPDPKMNKELPDGLIVPLG 386
           +G+T PDP       DG IVP G
Sbjct: 2   LGKTAPDPSATHTFEDGTIVPKG 24


>SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 261 CVNAEGFSKAPSGTHSVWGVG-RTEPDPK 344
           CV+A G+ +   GT++ W VG  TEP  K
Sbjct: 67  CVSAAGYDELVVGTYAGWVVGLTTEPQHK 95


>SB_22773| Best HMM Match : Ribosomal_L13 (HMM E-Value=7.5)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 577 IFHVVQFVDE*PQIMFYEDFKKNFFLYFFVNCIQEKK 687
           IF ++  VDE     F++++ K       +NC+++KK
Sbjct: 27  IFSILDQVDEPMSHHFFDEYYKKILKNVILNCVKKKK 63


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 316 PHTECVPDGALEKPSALTHSLYSRE 242
           P +E +P  A E+PSA TH+L + E
Sbjct: 597 PLSELIPLAAAERPSAATHALTADE 621


>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 11  TSPSRNSTTAASCGTAPAPPTSPALFHKVFVLRRPKLQ 124
           T P  N         AP PP +P  +H V  L +P LQ
Sbjct: 164 TGPVHNQQDMPLADLAPYPPDAPPPYHTV-ALNKPSLQ 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,385,256
Number of Sequences: 59808
Number of extensions: 460813
Number of successful extensions: 1904
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)