Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30627
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 116 2e-26
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 116 2e-26
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 81 8e-16
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 81 8e-16
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 81 8e-16
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 74 9e-14
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 74 9e-14
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 30 1.4
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 29 4.3
U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical pr... 28 5.6
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 28 7.4
AL031633-24|CAA21018.2| 176|Caenorhabditis elegans Hypothetical... 27 9.8
AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical ... 27 9.8
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 27 9.8
AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk (m... 27 9.8
AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 27 9.8
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 116 bits (278), Expect = 2e-26
Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Frame = +1
Query: 1 DKRYKPFKK-LHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSK 177
D FK+ + NRRLLWHGS NFAGI+ QGLRIAPPEAPV+GYMFGKG+YFADM SK
Sbjct: 770 DNESSKFKRHIGNRRLLWHGSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSK 829
Query: 178 SANYCCTTRNNPVGLMLLCEVALGNIRSVSMLK-VSLKPRPA 300
S YC +LLC+VALGN++ + K VS + PA
Sbjct: 830 SFFYCRANAKEE-AYLLLCDVALGNVQQLMASKNVSRQTLPA 870
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 291 PSGTHSVWGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQ 455
P+G SV G+GR P + PDG +PLG + + LLYNEFIVYDV Q
Sbjct: 869 PAGFQSVQGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQ 928
Query: 456 VKVKYLIEMRFDY 494
+++KYL+ ++ +
Sbjct: 929 IQLKYLVRVKMHH 941
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 1 protein.
Length = 945
Score = 116 bits (278), Expect = 2e-26
Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Frame = +1
Query: 1 DKRYKPFKK-LHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSK 177
D FK+ + NRRLLWHGS NFAGI+ QGLRIAPPEAPV+GYMFGKG+YFADM SK
Sbjct: 770 DNESSKFKRHIGNRRLLWHGSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSK 829
Query: 178 SANYCCTTRNNPVGLMLLCEVALGNIRSVSMLK-VSLKPRPA 300
S YC +LLC+VALGN++ + K VS + PA
Sbjct: 830 SFFYCRANAKEE-AYLLLCDVALGNVQQLMASKNVSRQTLPA 870
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 291 PSGTHSVWGVGRTEPDPKMNKELPDGLIVPLGTPVDRAENST-----LLYNEFIVYDVAQ 455
P+G SV G+GR P + PDG +PLG + + LLYNEFIVYDV Q
Sbjct: 869 PAGFQSVQGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQ 928
Query: 456 VKVKYLIEMRFDY 494
+++KYL+ ++ +
Sbjct: 929 IQLKYLVRVKMHH 941
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 81.0 bits (191), Expect = 8e-16
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = +1
Query: 4 KRYKPFKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 183
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2069 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2128
Query: 184 NYCCTTRNNPVGLMLLCEVALGNIRSVSML 273
+YC + + ML+C+ ALG +R++ +
Sbjct: 2129 HYCQPSAGG-INYMLVCQTALGKVRTLDTI 2157
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 81.0 bits (191), Expect = 8e-16
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = +1
Query: 4 KRYKPFKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 183
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2107 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2166
Query: 184 NYCCTTRNNPVGLMLLCEVALGNIRSVSML 273
+YC + + ML+C+ ALG +R++ +
Sbjct: 2167 HYCQPSAGG-INYMLVCQTALGKVRTLDTI 2195
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 81.0 bits (191), Expect = 8e-16
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = +1
Query: 4 KRYKPFKKLHNRRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 183
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2069 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2128
Query: 184 NYCCTTRNNPVGLMLLCEVALGNIRSVSML 273
+YC + + ML+C+ ALG +R++ +
Sbjct: 2129 HYCQPSAGG-INYMLVCQTALGKVRTLDTI 2157
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/72 (50%), Positives = 45/72 (62%)
Frame = +1
Query: 37 RRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTTRNNPV 216
+RLLWHG+R TN I+ GL+ P G MFG G+YFA++ +KSANYCC + V
Sbjct: 381 KRLLWHGTRVTNVFSILMNGLQF--PVGDRCGLMFGNGVYFANVPTKSANYCCPEASKRV 438
Query: 217 GLMLLCEVALGN 252
MLLCEV N
Sbjct: 439 -FMLLCEVETAN 449
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +3
Query: 405 ENSTLLYNEFIVYDVAQVKVKYLIEMRFD 491
E + LLY+E+++++ K+KY++E++ D
Sbjct: 501 EETRLLYDEYVMFNKEHFKIKYVVEVKVD 529
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/72 (50%), Positives = 45/72 (62%)
Frame = +1
Query: 37 RRLLWHGSRTTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTTRNNPV 216
+RLLWHG+R TN I+ GL+ P G MFG G+YFA++ +KSANYCC + V
Sbjct: 381 KRLLWHGTRVTNVFSILMNGLQF--PVGDRCGLMFGNGVYFANVPTKSANYCCPEASKRV 438
Query: 217 GLMLLCEVALGN 252
MLLCEV N
Sbjct: 439 -FMLLCEVETAN 449
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +3
Query: 405 ENSTLLYNEFIVYDVAQVKVKYLIEMRFD 491
E + LLY+E+++++ K+KY++E++ D
Sbjct: 501 EETRLLYDEYVMFNKEHFKIKYVVEVKVD 529
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 29 STTAASCGTAPAPPTSPAL 85
S+ ASC ++P+PPTSP L
Sbjct: 1965 SSNIASCSSSPSPPTSPTL 1983
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 29 STTAASCGTAPAPPTSPAL 85
S+ ASC ++P+PPTSP L
Sbjct: 1965 SSNIASCSSSPSPPTSPTL 1983
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 35 TAASCGTAPAPPTSPALF 88
TAAS +P PPTSPA+F
Sbjct: 20 TAASSPASPIPPTSPAMF 37
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 35 TAASCGTAPAPPTSPALF 88
TAAS +P PPTSPA+F
Sbjct: 20 TAASSPASPIPPTSPAMF 37
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 35 TAASCGTAPAPPTSPALF 88
TAAS +P PPTSPA+F
Sbjct: 20 TAASSPASPIPPTSPAMF 37
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 35 TAASCGTAPAPPTSPALF 88
TAAS +P PPTSPA+F
Sbjct: 20 TAASSPASPIPPTSPAMF 37
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 394 TGVPSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHS 257
T +P+ T S S +FG+ +V TP + PDG + S +T S
Sbjct: 20 TSLPT-TTSVLDKSRSLFGNSAVISTPARDSTPDGHIVDSSVITKS 64
>U29382-5|AAG00003.2| 353|Caenorhabditis elegans Hypothetical
protein R03H10.7 protein.
Length = 353
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 383 ERHNESVGQFLIHFRVRLSSTDAPHGMRAGRGFRET-FSIDTL 258
E ESV F IH RV L T PH + F T F+ DT+
Sbjct: 118 ENLKESVNYFKIHGRVTLMDTRPPHHYQKRFNFEITDFNGDTI 160
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 208 CFWWCSSSWQTWRPCPQ-SICPCRTCS 131
C C+ PCPQ + CPC TC+
Sbjct: 169 CGSGCTGGSVEQEPCPQQAACPCTTCN 195
>AL031633-24|CAA21018.2| 176|Caenorhabditis elegans Hypothetical
protein Y39A1A.2 protein.
Length = 176
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 5 SVTSPSRNSTTAASCGTAPAPPTSPALFHKVF 100
SVTSP A CG P PP + VF
Sbjct: 41 SVTSPKYPQNDAILCGQQPPPPPHKSTIKTVF 72
>AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical
protein Y68A4A.2 protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 502 NYNYFLSIRKSFYSIVM*CLMLYC*IFHVVQFVDE*PQIMFYEDFKKNFFLYFF 663
N+ ++I S +IV+ L+ + +F+V+ + + ++ + + FFLYFF
Sbjct: 85 NFILVVNINSSQINIVLIALLFFA-LFNVLYIITQAFHVLIFVLAVERFFLYFF 137
>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform a
protein.
Length = 1040
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 311 HGMRAGRGFRETFSI-DTLLIFPRATSHSNMRP 216
H AG G + F + DT+ +FP +H +M P
Sbjct: 800 HSYGAGHGHKNHFGLSDTIPLFPEEPTHYDMGP 832
>AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform b
protein.
Length = 978
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 311 HGMRAGRGFRETFSI-DTLLIFPRATSHSNMRP 216
H AG G + F + DT+ +FP +H +M P
Sbjct: 738 HSYGAGHGHKNHFGLSDTIPLFPEEPTHYDMGP 770
>AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical
protein Y82E9BL.15 protein.
Length = 273
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 497 SVIES-HFNQVFHFDLSHVVHDELVVQQRAVLRPVDG 390
SVI+S H Q+FHF+ V D+ V+ +R V G
Sbjct: 234 SVIDSNHMEQLFHFEEFLVNLDDFSVEHAVQIRDVSG 270
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 273 EGFSKAPSGTHSVWGVGRTEPDPKMN 350
E F+KA S+W RT DP +N
Sbjct: 292 EVFAKAKKANISIWNYVRTSADPSLN 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,273
Number of Sequences: 27780
Number of extensions: 348627
Number of successful extensions: 1198
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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