Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30626
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 123 3e-29
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.5
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 2.6
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 27 2.6
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 27 2.6
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 2.6
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 27 2.6
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 2.6
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.4
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.5
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 25 7.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.9
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 123 bits (296), Expect = 3e-29
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +1
Query: 1 VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
+ APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ K
Sbjct: 105 IAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAK 164
Query: 181 VGASEATLLNMLNISPFSYGLVV 249
VG SEATLLNMLNISPF+YG+ V
Sbjct: 165 VGPSEATLLNMLNISPFTYGMDV 187
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/84 (38%), Positives = 44/84 (52%)
Frame = +3
Query: 255 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 434
+YD G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL+
Sbjct: 190 IYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAV 249
Query: 435 XXXXXXXXXXXXXXKEFIKDPSKF 506
K F+ DPS F
Sbjct: 250 SLATEYTFEGTEQTKAFLADPSAF 273
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 146 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 21
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 491 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 312
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 311 IFWFDVQNF 285
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 595 SDDDMGFGLFD 627
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 153 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 31
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 470 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 330
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -1
Query: 257 YCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGIER 102
YC TRPY G V + P S+M I I+VG +R
Sbjct: 187 YCTETRPYNQGSRLTAFELVHDKIPATLVTDSTVASIMHKI--DAIVVGADR 236
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -1
Query: 494 VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGT 315
V L D G + +C+ +D ++++T + ++++ KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 314 EI 309
E+
Sbjct: 1076 EL 1077
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 153 IVDDFNSTL*NLGRDRKSL 97
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,611
Number of Sequences: 5004
Number of extensions: 45515
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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