Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30626
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 114 7e-26
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 114 7e-26
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 114 7e-26
06_01_0080 + 644021-645463 33 0.29
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 30 1.5
03_02_0966 + 12783515-12783901 30 2.0
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 3.5
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 8.2
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 114 bits (274), Expect = 7e-26
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +1
Query: 1 VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDK
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169
Query: 181 VGASEATLLNMLNISPFSYGLVV 249
VG+SE+ LL L I PFSYGLV+
Sbjct: 170 VGSSESALLAKLGIRPFSYGLVI 192
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/85 (52%), Positives = 59/85 (69%)
Frame = +3
Query: 255 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 434
VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 195 VYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAV 254
Query: 435 XXXXXXXXXXXXXXKEFIKDPSKFA 509
KE++KDPSKFA
Sbjct: 255 AVETEYSYPHADKIKEYLKDPSKFA 279
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 114 bits (274), Expect = 7e-26
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +1
Query: 1 VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDK
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169
Query: 181 VGASEATLLNMLNISPFSYGLVV 249
VG+SE+ LL L I PFSYGLV+
Sbjct: 170 VGSSESALLAKLGIRPFSYGLVI 192
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/85 (52%), Positives = 59/85 (69%)
Frame = +3
Query: 255 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 434
VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 195 VYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAV 254
Query: 435 XXXXXXXXXXXXXXKEFIKDPSKFA 509
KE++KDPSKFA
Sbjct: 255 AVETEYSYPHADKIKEYLKDPSKFA 279
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 114 bits (274), Expect = 7e-26
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +1
Query: 1 VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
V APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDK
Sbjct: 110 VGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169
Query: 181 VGASEATLLNMLNISPFSYGLVV 249
VG+SE+ LL L I PFSYGLV+
Sbjct: 170 VGSSESALLAKLGIRPFSYGLVI 192
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +3
Query: 255 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 434
VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 195 VYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAV 254
Query: 435 XXXXXXXXXXXXXXKEFIKDPSKFA 509
KE++KDPSKFA
Sbjct: 255 AVETEYSYPHADKIKEYLKDPSKFA 279
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 153 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 46
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 30.3 bits (65), Expect = 1.5
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = -1
Query: 464 FFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTEIFWFDVQNF 285
FFK CDS D +++ G +G S V++ + SS++ + T+ ++ +F
Sbjct: 493 FFKGINCDSHDDYVDIQSTGAISQGEQPSLVSSPIKMSSHLEQND---DTQETLQNIASF 549
Query: 284 RCKNSSR---IIYCLTTRPYENGEMFNMLRRVASEAPTLSPGF---KMCTSLMISIVPFE 123
+ S R + + T R N N L ++ E +SP F ++ S +VP E
Sbjct: 550 QVVMSERGKVVGFQPTNRLAVNHWATNPLTKLLYEGRKISPAFLEPRLRISRPAKVVPVE 609
Query: 122 ILVGIERAWKKEVFSGPRPV 63
+L+ + + F+ RPV
Sbjct: 610 LLMSVN---PESFFALVRPV 626
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 330 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 428
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 303 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 419
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 161 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 39
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,740
Number of Sequences: 37544
Number of extensions: 340405
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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