Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30626
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         98   7e-21
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.13 
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   4.8  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   8.4  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 44/63 (69%), Positives = 54/63 (85%)
 Frame = +1

Query: 1   VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
           V APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K
Sbjct: 89  VAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEK 148

Query: 181 VGA 189
           + A
Sbjct: 149 LKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 153 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 31
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 185  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 69
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 194 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 45
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1    VQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPG 174
            + +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+    PG
Sbjct: 2072 IVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNSTPG 2131

Query: 175  DK 180
             K
Sbjct: 2132 KK 2133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,010,565
Number of Sequences: 59808
Number of extensions: 361900
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)