Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30626
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   136   1e-32
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    29   4.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    29   4.2  
Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  136 bits (329), Expect = 1e-32
 Identities = 61/83 (73%), Positives = 73/83 (87%)
 Frame = +1

Query: 7   APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 186
           APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVG
Sbjct: 109 APAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVG 168

Query: 187 ASEATLLNMLNISPFSYGLVVKQ 255
           ASE+ LLNML ++PFSYGLVV+Q
Sbjct: 169 ASESALLNMLGVTPFSYGLVVRQ 191



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 42/85 (49%), Positives = 56/85 (65%)
 Frame = +3

Query: 255 VYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXX 434
           VYD GT++ PE+LD+  E+LR +F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L  
Sbjct: 192 VYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGV 251

Query: 435 XXXXXXXXXXXXXXKEFIKDPSKFA 509
                         K FI DPSKFA
Sbjct: 252 AAVTDVSFKEAETIKAFIADPSKFA 276



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 595 SDDDMGFGLFD 627
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 296 VQNFRCKNSSRIIYCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLM 144
           ++    +N  +++Y L TRPY  G     +  +  E P     FK+ T  M
Sbjct: 197 IRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVP-----FKLITDSM 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,533
Number of Sequences: 27780
Number of extensions: 266615
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)