Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30626
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 161 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 39
           +C   ++ +  +  L      WK     GP+PV + G T D
Sbjct: 8   LCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKD 48


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 413 TIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTEIF 306
           T+ NG+ G + S VTN+   S  +S+    + TE F
Sbjct: 251 TVKNGIYGIALSPVTNNLYYSPLLSHGLYYVDTEQF 286


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 90  FLPGSFYPYQDFKGYY*NHQ 149
           FLP S++P+Q     Y  H+
Sbjct: 311 FLPPSYHPHQHHPSQYHPHR 330


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 174 TGLQDVYIVDDFN 136
           TG+ D+++ DD N
Sbjct: 114 TGISDLFVFDDLN 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,122
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)