Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30626
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   113   1e-25
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   113   1e-25
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      113   1e-25
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    33   0.14 
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta...    28   5.2  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    28   6.8  
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat...    28   6.8  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +1

Query: 1   VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
           V APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDK
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 181 VGASEATLLNMLNISPFSYGLVVK 252
           VG+SEA LL  L I PFSYGLVV+
Sbjct: 169 VGSSEAALLAKLGIRPFSYGLVVQ 192



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/85 (43%), Positives = 55/85 (64%)
 Frame = +3

Query: 252 AVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLX 431
           +VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L 
Sbjct: 193 SVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALA 252

Query: 432 XXXXXXXXXXXXXXXKEFIKDPSKF 506
                          KEF+KDPSKF
Sbjct: 253 IAVATDYTFPQAEKVKEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +1

Query: 1   VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
           V APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDK
Sbjct: 109 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDK 168

Query: 181 VGASEATLLNMLNISPFSYGLVVK 252
           VG+SEA LL  L I PFSYGLVV+
Sbjct: 169 VGSSEAALLAKLGIRPFSYGLVVQ 192



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/86 (43%), Positives = 56/86 (65%)
 Frame = +3

Query: 252 AVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLX 431
           +VYD+G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L 
Sbjct: 193 SVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALA 252

Query: 432 XXXXXXXXXXXXXXXKEFIKDPSKFA 509
                          KE++KDPSKFA
Sbjct: 253 IAVATEYTFPQAEKVKEYLKDPSKFA 278


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +1

Query: 1   VQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 180
           V APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII  V ++K GDK
Sbjct: 110 VGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 181 VGASEATLLNMLNISPFSYGLVVK 252
           VG+SEA LL  L I PFSYGLVV+
Sbjct: 170 VGSSEAALLAKLGIRPFSYGLVVE 193



 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 41/86 (47%), Positives = 57/86 (66%)
 Frame = +3

Query: 252 AVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLX 431
           +VYD+G++F PE+L++  +DL  KF AGV+ + ALSLAI YPT+A+APH   N +KN+L 
Sbjct: 194 SVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLA 253

Query: 432 XXXXXXXXXXXXXXXKEFIKDPSKFA 509
                          KEF+KDP+KFA
Sbjct: 254 VALATEYSFPQAENVKEFLKDPTKFA 279


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +1

Query: 79  EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 243
           E     + L +P +++KGT+E++ D  + + G ++    A +L +L +   ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203


>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 299 DVQNFRCKNSSRIIYCLTTRPYENGEMFNMLRRVASE--APTLSPGFKMCTSLMISIVPF 126
           ++++ RCK  + + YC     Y NG+   ++  +A E  +  + P   +  +L++     
Sbjct: 549 EMEDGRCK-PNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC 607

Query: 125 EILVGIERAWKK 90
           ++L   ERA+ +
Sbjct: 608 DLLPEAERAFSE 619


>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 755

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 130 GTIEIINDVHILKPGDKVGASEATLLNMLNISPF-SYGLVVKQYMILELFLH 282
           G  ++   +++   G+K  A EA    +L + PF S   + KQY  L L LH
Sbjct: 43  GLKQLFVAINVYISGEKTFAGEADWYGVLGVDPFASDEALKKQYRKLVLMLH 94


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -1

Query: 413 TIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFRCKNSSRII-YCLTTRP 237
           T+GN M+  + S +     + + + NS   LG+E F  +  + + K  S +       +P
Sbjct: 214 TVGNNMKRTTQSPIKAKNSQPTQLKNSQRSLGSESFSKNTSSTKSKTKSSLASKSSIPKP 273

Query: 236 YENGEMFNMLRRVASEAPTLS 174
                  N++ + +SE PT+S
Sbjct: 274 SLKQARRNVISK-SSEIPTVS 293


>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
           / EDGP-related similar to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741
          Length = 405

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 338 NSSLELGTEIFWFDVQNFRCKNSSRIIYC 252
           N  L+LGT + W D +  +  +S R++ C
Sbjct: 54  NLLLDLGTNLTWLDCRKLKSLSSLRLVTC 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,086
Number of Sequences: 28952
Number of extensions: 257807
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)