Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30625x
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   130   1e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   130   1e-31
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.4  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   3.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   4.2  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   5.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.5  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   7.3  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   7.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    24   9.6  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    24   9.6  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (314), Expect = 1e-31
 Identities = 60/84 (71%), Positives = 71/84 (84%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 180
           KKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V 
Sbjct: 23  KKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVA 82

Query: 181 YNASNNELVRTKTLVKNAIVVVDA 252
           Y+ SNNELVRT TL K+AIV +DA
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDA 106



 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
           PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF 
Sbjct: 108 PFRVWYETHYGILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFA 161

Query: 435 TGRLLA 452
            GRL A
Sbjct: 162 AGRLYA 167


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (314), Expect = 1e-31
 Identities = 60/84 (71%), Positives = 71/84 (84%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 180
           KKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V 
Sbjct: 23  KKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVA 82

Query: 181 YNASNNELVRTKTLVKNAIVVVDA 252
           Y+ SNNELVRT TL K+AIV +DA
Sbjct: 83  YHPSNNELVRTNTLTKSAIVQIDA 106



 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
           PFR WYE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF 
Sbjct: 108 PFRVWYETHYGILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFA 161

Query: 435 TGRLLA 452
            GRL A
Sbjct: 162 AGRLYA 167


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 16   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 168
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 111
           +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 48  EKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 194 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 108
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 234  NCCSRCNPFRQWYESHYTLPLGRKKGA---KLTEAEEAIINKKRS 359
            +C   C   +Q  +++Y +PL  K+G    ++T + + ++  KR+
Sbjct: 1119 SCVIDCKLLQQQQQTNYEIPLDSKQGVLYLRITLSPKWVLRSKRA 1163


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 41  PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 136
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 449
           ++ K  +K A + L RQ+  K   A EE+    RLL
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL 223


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 222 CQECNCCSRCNPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 377
           C  C CCS   P   W    Y  P      A L +A   II+  R Q TA++
Sbjct: 165 CILCACCSTSCPSYWWNSEEYLGP------AVLMQAYRWIID-SRDQATAKR 209


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 252 NPFRQWYESHYTLPLGRKK 308
           N  ++W E+H T PL RK+
Sbjct: 134 NCLQKWLENHCTCPLCRKE 152


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 228 LDKGLCTHQFI 196
           L+KG CTHQF+
Sbjct: 92  LEKGECTHQFV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,822
Number of Sequences: 5004
Number of extensions: 31653
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)