Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30625x
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              141   2e-34
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           44   5e-05
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.0  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   27   7.4  
SB_36101| Best HMM Match : AlkA_N (HMM E-Value=0.047)                  27   9.7  
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)                       27   9.7  
SB_59765| Best HMM Match : Metallothio_2 (HMM E-Value=4.3)             27   9.7  
SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_16816| Best HMM Match : SRR1 (HMM E-Value=8.4)                      27   9.7  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  141 bits (342), Expect = 2e-34
 Identities = 66/84 (78%), Positives = 73/84 (86%)
 Frame = +1

Query: 4   KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 183
           KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVY
Sbjct: 8   KRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVY 67

Query: 184 NASNNELVRTKTLVKNAIVVVDAT 255
           NASNNELVRTKTLVKN IV VD+T
Sbjct: 68  NASNNELVRTKTLVKNCIVQVDST 91



 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
           PFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK  AR+  AKV   +EEQF 
Sbjct: 92  PFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKVAPGMEEQFV 151

Query: 435 TGRLLAC 455
           TGRL AC
Sbjct: 152 TGRLYAC 158


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 41/66 (62%)
 Frame = +1

Query: 52  PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 231
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 232 AIVVVD 249
           +IV VD
Sbjct: 97  SIVQVD 102


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 306 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 443
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 348 KKRSQKTARKYLARQRLAKVEGALEE 425
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 151 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 249
           T++ +I D++ N   N  VR +TL+ NA +++D
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIID 48


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 404 LSKTLPCQVFSCCLLTSLLVD 342
           + K+LP  + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543


>SB_36101| Best HMM Match : AlkA_N (HMM E-Value=0.047)
          Length = 694

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = -3

Query: 242 TTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYL 93
           T +AFLT V VR  S  D+      +  LR +    +EKL  S  SARYL
Sbjct: 85  TVMAFLTGV-VRGVSWADS--ERDALEALRTQTKKIEEKLVASLVSARYL 131


>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
          Length = 354

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 279 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRL 398
           ++TL      GAKLT  +  +  KK S  T +  +A +++
Sbjct: 94  NFTLDANHPLGAKLTTTKNPLTRKKNSVDTEKDSVATEKI 133


>SB_59765| Best HMM Match : Metallothio_2 (HMM E-Value=4.3)
          Length = 229

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS-TRKTRIIDV 177
           +KRK         T+ GP     VR RGG  +        G    G  C+   + +   V
Sbjct: 102 RKRKRPTAAATTTTKQGP-----VRGRGGGGRGGGRGYGRGGSGGGGNCTCDEEAKEAVV 156

Query: 178 VYNASNNELVRTKTLVKNAIVVVDATHSGSGMSRI 282
           V N  +N        V+  +VVVD+  S  G+  +
Sbjct: 157 VDNDDSNNSYE----VEEKVVVVDSDDSDCGVGGV 187


>SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 252 CIYYNNCILDKGLCTHQFIVRCIIHNINDT 163
           C+Y  N I +  +CT  FI    IH   D+
Sbjct: 237 CLYEENLIFEDPICTQMFIEGLQIHLFPDS 266


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 231 CNCCSRCNPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRL 398
           C C + C     W   H+T+P G   G  +      I++ +  Q   +   A  RL
Sbjct: 626 CLCLTGCAVLESWAGIHWTIPDGTWSGCCMVPFSLRILHAELPQYIGKPNEALDRL 681


>SB_16816| Best HMM Match : SRR1 (HMM E-Value=8.4)
          Length = 195

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +1

Query: 40  TRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKT 219
           TR+  Q    + S+G N   R L L   N    +E S R     D  +N++N ELV   T
Sbjct: 74  TRVVAQPNAQINSKGQN---RFLILIVRNNKHLNERSRRAIDYFDRYFNSANFELVTRFT 130

Query: 220 LVKN 231
            +KN
Sbjct: 131 SIKN 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,359
Number of Sequences: 59808
Number of extensions: 266924
Number of successful extensions: 748
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)