Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30625x
(457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 138 1e-33
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.30
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.30
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.30
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.30
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.30
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.30
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 28 2.8
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 3.7
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 3.7
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical ... 27 4.9
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical p... 27 6.5
Z83236-4|CAB05781.1| 191|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 8.6
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 138 bits (335), Expect = 1e-33
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +1
Query: 1 KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 180
KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +
Sbjct: 23 KKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTM 82
Query: 181 YNASNNELVRTKTLVKNAIVVVDA 252
YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 83 YNATNNELVRTKTLVKGAIISVDA 106
Score = 95.5 bits (227), Expect = 2e-20
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = +3
Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+
Sbjct: 108 PFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFN 167
Query: 435 TGRLLA 452
TGRLLA
Sbjct: 168 TGRLLA 173
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 103 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 207
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 178 VYNASNNELVRTKTLVKNAIVVVDATHSGS-GMSRI 282
+YNA E+ + K +VK+ VV++ SGS G+S +
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGSEGVSSL 483
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 178 VYNASNNELVRTKTLVKNAIVVVDATHSGS 267
+YNA E+ + K +VK+ VV++ SGS
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGS 477
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 178 VYNASNNELVRTKTLVKNAIVVVDATHSGS 267
+YNA E+ + K +VK+ VV++ SGS
Sbjct: 448 IYNAYETEIHQQKDIVKSTTVVLEDVRSGS 477
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 300 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 425
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 206 TNSLLDALYTTSMIRVLRV 150
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 145 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATHSGSGMS 276
C+ R + + S+N+LV K VKNAI +D GS S
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSFGSQSS 1714
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 145 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATHSGSGMS 276
C+ R + + S+N+LV K VKNAI +D GS S
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSFGSQSS 1714
>AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical
protein C39B5.6 protein.
Length = 397
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +1
Query: 133 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATHSGSGMSRII 285
WG+ + I ++ A N E+ R ++KN V + T + R +
Sbjct: 123 WGTRTEIKNMNSIRTIHTAINYEIARQFEILKNGGAVQNETRAADSEGRTV 173
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 433 WNCSSRAPSTLARRCLA 383
W C +RAP+T+ RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571
>Z83236-10|CAB05780.2| 236|Caenorhabditis elegans Hypothetical
protein K10H10.4 protein.
Length = 236
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 228 ECNCCSRCNPFRQWYESHYTLPLGRKKG 311
+CNC S C+ + Q +Y P G G
Sbjct: 36 QCNCPSFCSGYMQQQPQYYQSPCGYSSG 63
>Z83236-4|CAB05781.1| 191|Caenorhabditis elegans Hypothetical
protein K10H10.5 protein.
Length = 191
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 225 QECNCCSRCNPFRQWYESHY 284
Q CNC S C P+ +E +Y
Sbjct: 13 QSCNCQSFCQPYTHPHEMYY 32
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 201 IGAYKDPCQECNC---CSRCNPFRQWYESHYT 287
IG K+ C++CNC RC+ R YES T
Sbjct: 334 IGDEKNECRQCNCNRHALRCHFDRAVYESSGT 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,891
Number of Sequences: 27780
Number of extensions: 186511
Number of successful extensions: 687
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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