Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30625x
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   168   3e-44
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   0.90 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   0.90 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   2.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   2.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   6.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   6.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  168 bits (408), Expect = 3e-44
 Identities = 77/85 (90%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVV 180
           KKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVV
Sbjct: 23  KKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVV 82

Query: 181 YNASNNELVRTKTLVKNAIVVVDAT 255
           YNASNNELVRTKTLVKNAIV +DAT
Sbjct: 83  YNASNNELVRTKTLVKNAIVTIDAT 107



 Score =  115 bits (276), Expect = 3e-28
 Identities = 52/67 (77%), Positives = 57/67 (85%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
           PFRQWYE HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE ALEEQF 
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFA 167

Query: 435 TGRLLAC 455
           TGR+LAC
Sbjct: 168 TGRVLAC 174


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 243 YNNCILDKGLCT 208
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 243 YNNCILDKGLCT 208
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 243 YNNCILDKGLCTHQ 202
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 243 YNNCILDKGLCTHQ 202
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 243 YNNCILDKGLCT 208
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 243 YNNCILDKGLCT 208
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 243 YNNCILDKGLCT 208
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 266 LPEWVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHSDPQ 132
           L E +  T+ +  L   FV    +LD       + VL V    PQ
Sbjct: 289 LAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQ 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,726
Number of Sequences: 438
Number of extensions: 2414
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)