Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30625x
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   132   1e-31
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   130   4e-31
At4g03090.1 68417.m00417 expressed protein                             29   1.5  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   2.0  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   3.4  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   6.0  
At1g75470.1 68414.m08766 purine permease-related contains Pfam p...    27   7.9  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  132 bits (319), Expect = 1e-31
 Identities = 62/85 (72%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 177
           KKRKYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TRKTR++DV
Sbjct: 23  KKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDV 82

Query: 178 VYNASNNELVRTKTLVKNAIVVVDA 252
           VYNASNNELVRTKTLVK+AIV VDA
Sbjct: 83  VYNASNNELVRTKTLVKSAIVQVDA 107



 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAK 404
           PF+QWY SHY + LGR KK A  T     E EEA +      K+S    RK  +RQ    
Sbjct: 109 PFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRS 168

Query: 405 VEGALEEQFHTGRLLAC 455
           ++  +E+QF +GRLLAC
Sbjct: 169 LDSHIEDQFASGRLLAC 185


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  130 bits (314), Expect = 4e-31
 Identities = 63/85 (74%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   KKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 177
           KKRKYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV
Sbjct: 23  KKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDV 82

Query: 178 VYNASNNELVRTKTLVKNAIVVVDA 252
            YNASNNELVRT+TLVK+AIV VDA
Sbjct: 83  AYNASNNELVRTQTLVKSAIVQVDA 107



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 29/67 (43%), Positives = 37/67 (55%)
 Frame = +3

Query: 255 PFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFH 434
           PF+Q Y  HY + +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF 
Sbjct: 109 PFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFS 164

Query: 435 TGRLLAC 455
           +GRLLAC
Sbjct: 165 SGRLLAC 171


>At4g03090.1 68417.m00417 expressed protein 
          Length = 877

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 290 QRIMRLIPLPEWVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVL 156
           Q I+ L   PE+V +T TIA  +R+  +  S+L  L+    +  L
Sbjct: 257 QSILSLTITPEFVGATVTIASTSRMKAKVLSILQHLFEAESVSFL 301


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 82  GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 243
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 212 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 81
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 276 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 425
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At1g75470.1 68414.m08766 purine permease-related contains Pfam
           profile PF03151: Domain of unknown function, DUF250; low
           similarity to purine permease [Arabidopsis thaliana]
           GI:7620007
          Length = 381

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 62  STPFVHVVEI-LSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPLSRMQL 238
           S P  H V+I L     + TP++   D N +  + V++++C +      C+ R L     
Sbjct: 4   SNPQEHFVQIALDIEHRLTTPISLTSDSNQRRNQWVTIIICTILAVTGQCIARLLENYYF 63

Query: 239 L 241
           L
Sbjct: 64  L 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,569
Number of Sequences: 28952
Number of extensions: 169409
Number of successful extensions: 520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)