Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30624x
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 108 5e-25
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 107 7e-25
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.2
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 2.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 2.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 8.4
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 25 8.4
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 108 bits (259), Expect = 5e-25
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = +2
Query: 257 TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINP 436
TQ RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN A RRRTYRAHGR+
Sbjct: 79 TQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTA 138
Query: 437 YMSSPCHIEVCLSEREDAVAR 499
Y+SSP HIE+ ++E E+AV +
Sbjct: 139 YLSSPSHIEIIVAEEEEAVPK 159
Score = 90.2 bits (214), Expect = 2e-19
Identities = 44/84 (52%), Positives = 53/84 (63%)
Frame = +3
Query: 24 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 203
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60
Query: 204 RRFNGGVGRCAQAKQFGQHRVAGP 275
RRFNGGVGR AQ K+FG + P
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWP 84
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 107 bits (258), Expect = 7e-25
Identities = 47/81 (58%), Positives = 61/81 (75%)
Frame = +2
Query: 257 TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINP 436
TQ RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN A RRRTYRAHGR+
Sbjct: 79 TQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTA 138
Query: 437 YMSSPCHIEVCLSEREDAVAR 499
Y+SSP HIE+ ++E E+AV +
Sbjct: 139 YLSSPSHIEIIVAEEEEAVPK 159
Score = 89.4 bits (212), Expect = 3e-19
Identities = 44/84 (52%), Positives = 53/84 (63%)
Frame = +3
Query: 24 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 203
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60
Query: 204 RRFNGGVGRCAQAKQFGQHRVAGP 275
RRFNGGVGR AQ K+FG + P
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWP 84
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 84 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 197
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 236 SSKAVWPTQGRWPKKSAE 289
SSK +W GRW K +E
Sbjct: 80 SSKEIWEKSGRWQKTGSE 97
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 352 QASYRPHSGKSRDLPTQTYIPCSRS---HQPLHVVSLPHRSMS 471
Q+ + S K R +T + ++S HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 144 LRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGQHRVAGPRNPPN 290
L V LKN +E+K +P R + +GR ++ + + + N PN
Sbjct: 1028 LLEIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPN 1076
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 81 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 188
+N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 384 RFT*MWSITSLSTSKVLLSAFDS-AFLNN 301
R+ +W++++L + VL+ FD F+NN
Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINN 879
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/51 (23%), Positives = 21/51 (41%)
Frame = +1
Query: 49 ITLRNHAKRVVQTSVFTLRTHMRPQWQSERCRSDVLFVTSKT*LKRKSVFH 201
+ L NH V + ++F + H QW + + +L T + L H
Sbjct: 128 VLLYNHQGFVTEATIFNVAFHRNGQWITPSLKHGLLSGTMRKNLLENGSIH 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,157
Number of Sequences: 5004
Number of extensions: 39565
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -