Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30624x
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              113   8e-26
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  29   2.8  
SB_25697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              27   6.6  
SB_12006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   8.7  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  113 bits (272), Expect = 8e-26
 Identities = 50/74 (67%), Positives = 63/74 (85%)
 Frame = +3

Query: 24  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 203
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 204 RRFNGGVGRCAQAK 245
           R++NGGVGR AQAK
Sbjct: 61  RKYNGGVGRKAQAK 74



 Score =  100 bits (240), Expect = 6e-22
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = +2

Query: 257 TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRIN 433
           +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN A  +RRRTYRAHGRIN
Sbjct: 81  SQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 WSLCSSKAVWPTQGRWPKKSAEFLLQLLRN 313
           W  C ++ VW   G W + SAE +   LR+
Sbjct: 140 WPTCHARIVWSKWGEWGECSAEGIKSRLRH 169


>SB_25697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 254 PTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 388
           PT+  WP ++ E L +     E+N+D+   DV R   D   ++R+
Sbjct: 115 PTRANWPDQAREILFE----GETNSDDNEPDVSRDKGDDPDISRS 155


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 162 YLKNVIEKKECIPFRRFNGGVGRCAQAKQFGQHRVAGPRNPPNSSCSY 305
           Y  +  + ++C P+R +     R  Q  Q   HR   P  PP+   +Y
Sbjct: 498 YRTDSTQHRQCAPYRLYPAQTVRTVQTTQ---HRQCAPYRPPSIDSAY 542


>SB_12006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 275 WASDPVLAKLLCLSTATNAAVEATE-WNTLFLFNHVFEVTNSTSERHLSD 129
           +++ PV  K +  +++T  A  A+  WN LF    + E+     +RH +D
Sbjct: 21  FSTKPVFDKWIFETSSTCYATLASNLWNDLFTLFELTEIMRQKDDRHFAD 70


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 353 CQRPKFCCQRLIQRSSITARGIR-RISWASD 264
           C+ PK+C Q L++R     R +  R+ W  D
Sbjct: 366 CENPKYCSQALLERIVEPERVLSFRVPWLDD 396


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 185 LFNHVFEVTNSTSERHLSDCHCGLICVLKVNTEV*TTRFA 66
           L +H+ +V+++       D   GL+C L ++ E+  T+FA
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFA 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,630
Number of Sequences: 59808
Number of extensions: 342307
Number of successful extensions: 954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)