Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30624x
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   135   2e-32
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   110   6e-25
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    28   4.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  135 bits (326), Expect = 2e-32
 Identities = 62/81 (76%), Positives = 70/81 (86%)
 Frame = +2

Query: 257 TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINP 436
           TQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINP
Sbjct: 81  TQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINP 140

Query: 437 YMSSPCHIEVCLSEREDAVAR 499
           YMSSPCHIEV L+E+ED V++
Sbjct: 141 YMSSPCHIEVILAEKEDVVSK 161



 Score =  111 bits (268), Expect = 2e-25
 Identities = 50/73 (68%), Positives = 60/73 (82%)
 Frame = +3

Query: 33  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 212
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 213 NGGVGRCAQAKQF 251
           +GG+GR AQ KQ+
Sbjct: 66  HGGIGRAAQTKQW 78


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  110 bits (264), Expect = 6e-25
 Identities = 51/68 (75%), Positives = 58/68 (85%)
 Frame = +2

Query: 296 LQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINPYMSSPCHIEVCLS 475
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 476 EREDAVAR 499
           E+ED V++
Sbjct: 126 EKEDVVSK 133



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +3

Query: 33  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 212
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 218 AVEATEWNTLFLFN--HVFEVTNSTSERHLSDCHCGLICVLKVN 93
           AV A  W  L +F+  + FE+ NS S    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -1

Query: 458 CGRETTCRG*CDREHGMYVCVGRSRDLPECGR*LACQRPKFCC 330
           CG +T  R  C  +    +C G + +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = -1

Query: 284 RISWASDPVLAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTSERHLSDCHCGL 114
           R S A  P+  ++ C S  + +   + ++  T +++  VF     +  SER +    CG 
Sbjct: 34  RSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGS 93

Query: 113 ICVLKVNTEV*TTRFA*FRRVIR-LPRVTTHNY 18
           +CV  +  +V    F  F+ +   L RV  H +
Sbjct: 94  VCVSLMEPDVEAGVFIGFKHIRGCLDRVLRHGF 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,348
Number of Sequences: 27780
Number of extensions: 239274
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)