Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30624x
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 125 2e-29
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 125 2e-29
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 31 0.33
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 31 0.44
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 31 0.44
At1g06630.1 68414.m00700 F-box family protein contains F-box dom... 30 1.0
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 5.4
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 7.1
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 7.1
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 27 9.4
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 27 9.4
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 125 bits (301), Expect = 2e-29
Identities = 57/80 (71%), Positives = 67/80 (83%)
Frame = +2
Query: 260 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINPY 439
QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPY
Sbjct: 81 QGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPY 140
Query: 440 MSSPCHIEVCLSEREDAVAR 499
MS+PCHIE+ LSE+E+ V +
Sbjct: 141 MSNPCHIELILSEKEEPVKK 160
Score = 107 bits (258), Expect = 3e-24
Identities = 52/74 (70%), Positives = 60/74 (81%)
Frame = +3
Query: 24 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 203
M +YS+EPDN KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60
Query: 204 RRFNGGVGRCAQAK 245
RF GVGR AQAK
Sbjct: 61 TRFCRGVGRTAQAK 74
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 125 bits (301), Expect = 2e-29
Identities = 57/80 (71%), Positives = 67/80 (83%)
Frame = +2
Query: 260 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRATCLRRRTYRAHGRINPY 439
QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPY
Sbjct: 81 QGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPY 140
Query: 440 MSSPCHIEVCLSEREDAVAR 499
MS+PCHIE+ LSE+E+ V +
Sbjct: 141 MSNPCHIELILSEKEEPVKK 160
Score = 107 bits (256), Expect = 5e-24
Identities = 51/74 (68%), Positives = 60/74 (81%)
Frame = +3
Query: 24 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 203
M +YS+EPDN KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60
Query: 204 RRFNGGVGRCAQAK 245
RF GVGR AQAK
Sbjct: 61 TRFCRGVGRTAQAK 74
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 31.5 bits (68), Expect = 0.33
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 281 ISWASDPVLAKLLCL---STATNAAVEATEWNTLFLFNHVFEVTNSTSERHLSDCHCGL 114
ISW D VL K+L L A + ++ A +W T+F E+ +S S + + D GL
Sbjct: 234 ISWLPDEVLGKILSLIPTKQAVSTSLLAKKWRTIFRLVDHLELDDSFSLQAVKDQTPGL 292
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 31.1 bits (67), Expect = 0.44
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 236 SSKAVWPTQGRWPKKSAEFLLQLLRNAESN 325
++ +V P+ RWPK E L+++ +N E+N
Sbjct: 387 NNHSVSPSSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 31.1 bits (67), Expect = 0.44
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 236 SSKAVWPTQGRWPKKSAEFLLQLLRNAESN 325
++ +V P+ RWPK E L+++ +N E+N
Sbjct: 310 NNHSVSPSSSRWPKTEVEALIRIRKNLEAN 339
>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 281 ISWASDPVLAKLLCL---STATNAAVEATEWNTLFLFNHVFEVTNSTS 147
I+W D +L K+L L A + +V + +W TLF E +S S
Sbjct: 14 INWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVS 61
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 36 SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 191
SR+P S + VH +N Y + +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 191 VYSIPSLQRRRWSLCSS 241
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 369 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 283
W + ++ + + L A S F+NNC +NSA
Sbjct: 57 WLVPAIVVANIALFAI-SMFINNCPKNSA 84
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 363 ITSLSTSKVLL-SAFDSAFLNNCKRNSADFLGQRPCVGQTALLEHSDQRRR*SDG 202
I S+ + K L+ S ++ + NC N + + V T+++EH+++ G
Sbjct: 58 ILSVESKKFLIDSVSPTSVIANCGSNQLELVSDSITVSPTSVIEHTEEEEEEEGG 112
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 260 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 364
+G+ P+++ EF+LQLL+ N+ N DV L +
Sbjct: 778 EGKSPREAVEFILQLLK-YNDNSGNSYSDVFWLAV 811
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,485
Number of Sequences: 28952
Number of extensions: 220000
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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