Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30623
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 97 8e-21
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 31 1.0
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 30 1.4
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 29 3.1
02_02_0737 - 13529180-13529543,13530661-13531178 29 3.1
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662... 29 4.1
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 29 4.1
02_05_1287 - 35459419-35459955,35460043-35460966,35461881-354622... 28 5.5
06_03_0986 - 26574083-26574952 28 7.2
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 7.2
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 28 7.2
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 9.6
04_03_0443 + 15999984-16000895,16002402-16003025 27 9.6
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847... 27 9.6
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 97.5 bits (232), Expect = 8e-21
Identities = 48/104 (46%), Positives = 61/104 (58%)
Frame = +1
Query: 7 VEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRV 186
VEET VRDKAV SL + + + FVP+V+RLA G+WFT+R S+CGLF + YP
Sbjct: 97 VEETCVRDKAVESLCRIGAQMKESDIVDWFVPVVKRLAAGEWFTARVSSCGLFHIAYPSA 156
Query: 187 SAPVKAELRQHFRSLCQDDTPMVAALLPTNLESLRKLWRLNMLR 318
+KAELR + LCQDD PMV +NL N L+
Sbjct: 157 PDQLKAELRTIYGQLCQDDMPMVRRAAASNLGKFAATVEQNYLK 200
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
RRAAA LG+FA VE Y+K++++ IF L +DDQDSVR P+D
Sbjct: 180 RRAAASNLGKFAATVEQNYLKTEVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239
Query: 435 QHVMPTVRALSGDASWRVRYMVAD 506
H++P + S D SWRVRYMVA+
Sbjct: 240 AHILPVIVNFSQDKSWRVRYMVAN 263
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
R A +L E + V E+ + L+P +V L D++ VR +P+
Sbjct: 258 RYMVANQLYELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAI 317
Query: 435 QHVMPTVRALSGDASWRVRYMVA 503
QH++P V+ LS D+S VR +A
Sbjct: 318 QHILPCVKELSSDSSQHVRSALA 340
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -2
Query: 447 ASHAAPYPQESIEPQQPRRLRQPADERNLDHPLPKSQIWE*DRS*HIQSPQLSQTLQVCR 268
+S A P P ES Q + +QP +E + P P + E D I P+L+ LQ
Sbjct: 309 SSSAPPTPDESHTQQAQPQPQQPTEESSNTEPKPLLFVAEQD---GIPEPELNPQLQTAE 365
Query: 267 QQRGD 253
Q D
Sbjct: 366 QHGSD 370
>12_02_1283 - 27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -2
Query: 570 KICARSVRASSWPTACCSSTNYQQPYIGL-SKKRLRTVHVQLASHAAPYPQESIEPQQPR 394
K + +SS+P S+N Q+P + + S+ T Q A+ A P E E + R
Sbjct: 994 KASSNKAHSSSYPRVPSRSSNTQRPLLSVQSEGANMTTARQAAAAGASLPPEPEEAGRRR 1053
Query: 393 RLRQPADERNLDHPLPKS 340
R ++ A E + D+ +S
Sbjct: 1054 RRQRKAIEEDEDNSSDES 1071
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 170 TLNSPQADVLEVNQSPPARRCTSGTKCSSSAC-GLWCSATARSEATALSRTTVSSTA 3
+L +P + +L + + SG+ CSS AC G+ CSA + + T VSST+
Sbjct: 16 SLRTPLSPLLFLRPASCNPSAVSGS-CSSGACRGVRCSAANKPSPSTAPGTEVSSTS 71
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 164 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTA 3
+SPQ +V + P RR S T SSS+C +A +R + S T SST+
Sbjct: 79 SSPQPRPPQVRRPQPPRRHRS-TAPSSSSCQFQAAAPSRPPSALPSPTASSSTS 131
>04_04_1225 -
31865556-31865590,31865687-31865734,31866179-31866262,
31866336-31866395,31866589-31866642,31866747-31867710
Length = 414
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 480 KKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHPLP 346
+KR TV+ Q AS P P E + +P ++R+P ++ H +P
Sbjct: 194 RKRPSTVYRQ-ASGPIPVPLEDVTFAKPLQMRRPVEKSFTKHTVP 237
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 474 RLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHPLPKSQIWE*DRS*HIQSPQ 295
RL+ V + A P P S++ + R+R P DE P P ++ + + +
Sbjct: 31 RLQEPRVMASPQAPPLPLSSLQESRSARIRIPRDE---PRPTPPARSSSREEPRFVAETK 87
Query: 294 LSQTLQVCRQQRGDHRSI 241
L T+ C + GD R +
Sbjct: 88 LI-TVHSCAGRLGDAREV 104
>02_05_1287 -
35459419-35459955,35460043-35460966,35461881-35462268,
35463645-35463748,35464740-35464928,35465231-35465362
Length = 757
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 146 VLEVNQSPPARR-CTSGTKCSSSACGLWCSATARSEATALSRTT 18
V+E QSP + C +G++CSSS S T+ S A A T
Sbjct: 60 VVEQLQSPNSTSPCMTGSRCSSSTTARRISVTSASAAAAADDLT 103
>06_03_0986 - 26574083-26574952
Length = 289
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 122 EETGSLQEHLLVDYLVYATHVSRHL*RQNFVSISAP---SVKMILRWSPR 262
E G E L YL+ THV R + +N V++ P +V +LR S R
Sbjct: 43 EILGRFPEFGLFSYLISKTHVDRDINSRNTVTVLVPDNSAVDWLLRRSAR 92
>02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 383 SQQTNGILIILCQNHKYGNKIALNIFNLHNFRKLSKFVGSSAATIGVS 240
S TN +I L N+ YG+ ++ LHN R L ++ + TI VS
Sbjct: 1056 SSCTNLKVIDLKHNNFYGDLGKVDFSALHNLRTLDLYLNNFTGTIPVS 1103
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 164 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRT 21
+S D L N P RR + G CS G+ CS + + + SR+
Sbjct: 280 SSSSDDELLHNSIKPGRRNSGGPSCSICKIGIACSFLIKCKNSTCSRS 327
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 417 TPEDMEQHVMPTVRALSGDASWRVRYMVADNS 512
TP D +++ MP +L GD R++Y NS
Sbjct: 1423 TPRDSQRYGMPRPTSLQGDEQQRIQYNQMLNS 1454
>04_03_0443 + 15999984-16000895,16002402-16003025
Length = 511
Score = 27.5 bits (58), Expect = 9.6
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +1
Query: 46 LRAVAEHHSPQAL--EEHFVPLVQRLAGGDWFTSRTSACGLFSVCY-PRVSAPVKAELRQ 216
LR E SP + E V L+ AGG +S T + + PRV A V++E+RQ
Sbjct: 282 LRLQKEGGSPIPITNEVIVVLLMDMFAGGTDTSSTTLIWAMAELIRSPRVMAKVQSEMRQ 341
Query: 217 HF---RSLCQDDTPMVAALLPTNLESLR 291
F ++ +DD ++ L E+LR
Sbjct: 342 IFDGKNTITEDDLVQLSYLKMVIKETLR 369
>02_04_0228 -
21083917-21084067,21084489-21084577,21084662-21084731,
21084747-21084823,21084954-21085337,21085420-21085760,
21085869-21085950,21086033-21086391,21087084-21087204,
21087427-21087512,21088896-21088944,21089262-21089275,
21089467-21089545
Length = 633
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 538 LAYSLLQLYELSATIYRTLQEA 473
+ YS L LYEL IY +LQEA
Sbjct: 114 IQYSTLGLYELVEKIYASLQEA 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,536
Number of Sequences: 37544
Number of extensions: 369429
Number of successful extensions: 1322
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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