Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30623
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)             111   6e-25
SB_18719| Best HMM Match : UPF0023 (HMM E-Value=0)                     30   1.4  
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_28422| Best HMM Match : TerC (HMM E-Value=4)                        29   4.2  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   4.2  
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  28   5.6  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               28   5.6  
SB_42230| Best HMM Match : PFK (HMM E-Value=0)                         28   5.6  
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                    28   5.6  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              28   7.4  
SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)                  28   7.4  
SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 27   9.8  
SB_46991| Best HMM Match : PE (HMM E-Value=2.6)                        27   9.8  
SB_45335| Best HMM Match : Runt (HMM E-Value=0)                        27   9.8  
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)
          Length = 405

 Score =  111 bits (266), Expect = 6e-25
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = +1

Query: 31  KAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAEL 210
           +AV SLR ++   S Q LE HFVPL++RL+ GDWFT RTSACGLFSVCYPR++A +KAEL
Sbjct: 26  QAVESLRLISADLSTQDLENHFVPLLKRLSQGDWFTLRTSACGLFSVCYPRINANMKAEL 85

Query: 211 RQHFRSLCQDDTPM 252
           R  FR+LC DDTPM
Sbjct: 86  RVQFRNLCNDDTPM 99



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 37/75 (49%), Positives = 50/75 (66%)
 Frame = +3

Query: 282 EFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDMEQHVMPTVRA 461
           EFAKV+E+E+VKS+L+P+F  L+ D+QDSVR                ED +  +MPTV++
Sbjct: 100 EFAKVMELEFVKSELVPLFTNLSSDEQDSVRLLAVENCPQIAQVLPHEDKDSILMPTVKS 159

Query: 462 LSGDASWRVRYMVAD 506
            + D SWRVRYMVAD
Sbjct: 160 AAYDKSWRVRYMVAD 174



 Score = 34.7 bits (76), Expect = 0.065
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 515 ELQQAVGQELARTDLAQIFQALLKD 589
           ELQ+AVG E+ +T+L   FQ LLKD
Sbjct: 178 ELQKAVGPEITKTELVPAFQVLLKD 202


>SB_18719| Best HMM Match : UPF0023 (HMM E-Value=0)
          Length = 208

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +1

Query: 7   VEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRV 186
           ++E +  D+A   LR V      + ++E   PL+ ++   +W       C +   CY  +
Sbjct: 119 LKENMQIDRAQMRLRLVLPGKDAKKVQEKLRPLMTKVESEEWDMDLEIVCLVDPGCYRSI 178

Query: 187 SAPVKAELR 213
              ++AE R
Sbjct: 179 DETLRAETR 187


>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 516 STNYQQPYIGLSKKRLRTVHVQLASHAAPYPQESIEPQQ 400
           S +Y +P+  +++K   T H+ +AS A P PQ +  P+Q
Sbjct: 290 SEDYDKPWEWMARK---TQHMSMASPAIPKPQNTATPKQ 325


>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
          Length = 465

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = -2

Query: 558 RSVRASSWPTACCSSTNYQQPYIGLSKKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQP 379
           +   A S  TA       QQP++  + + +R  HVQ A  A  + +    P++ R +   
Sbjct: 264 KDTNAGSLGTARPPRMRKQQPHVKFATRMVRLFHVQHAHWALTWME---GPKRSRCMLTQ 320

Query: 378 ADERNLDHPLPKSQIW 331
              R   HP P    W
Sbjct: 321 RQHRKHSHPHPIWVTW 336


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 483 SKKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHPLPKS 340
           +KK    +++   S ++P P+ ++E  +P  L   A     D PL  S
Sbjct: 807 TKKPTEPIYINRKSLSSPEPESAVELSRPDSLTMEAPTTKTDRPLSPS 854


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = -2

Query: 501 QPYIGLSKKRLRTVHVQLASHAA---PYPQESIEPQQPRRLRQP----ADERNLDHPLPK 343
           +P+  L   R +  H  L  H     P PQE   PQ+P R ++P       R L+ P P+
Sbjct: 76  EPHRPLEPHRPQEPHRPLEPHRPLEPPRPQEPHRPQEPPRPQEPHRPQEPHRPLEPPRPQ 135

Query: 342 SQ 337
            Q
Sbjct: 136 EQ 137


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 444 SHAAPYPQESIEPQQPRRLRQP-ADERNLDHPLP 346
           S + P PQE   PQQP++L +P   +++++ P+P
Sbjct: 207 SASGPRPQE---PQQPKKLIRPQGSQKSVEEPMP 237


>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
          Length = 1103

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 489 GLSKKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHP 352
           GLSK+ L+T  V L      YP  +++  QP + ++ +  ++  HP
Sbjct: 199 GLSKEALKTRQVHLQKSLRDYP--ALKQAQPSKAKRTSKRQSYIHP 242


>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 483 SKKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHPLPK 343
           +K R  TV +         P+++I P Q R L  PA  RN+ +P PK
Sbjct: 66  TKLRPPTVLIVRPLKTGTTPRKNI-PDQERSLPIPAPRRNIPYPQPK 111


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 110 CTSGTKCSSSACGLWCSATARSEATALSRTTVSS 9
           C  G+KC S  C L C    R  +T     T SS
Sbjct: 629 CDEGSKCCSDGCKLKCVQLKRQASTPPPPPTTSS 662


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 143 LEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTT 18
           + V QS   R C S T+C S+A    C +T   E+T    +T
Sbjct: 277 VRVRQSESTRECESTTECESTA---ECESTTECESTRECEST 315


>SB_6376| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-33)
          Length = 304

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 256 AALLPTNLESLRKLWRLNMLRAILFPYL 339
           A L+ TN +SL +LW ++M+   + P++
Sbjct: 148 ARLVTTNPQSLPRLWTISMVVTFILPFI 175


>SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 50  VPLPSTTARKHSRNTLCH*YSALLEETGSLQEHLLVDYLV 169
           +PLP T  ++     L + Y   L    +  EHL+++YLV
Sbjct: 111 LPLPLTDYKQVKTYDLTYHYGVYLAGDAAKLEHLMIEYLV 150


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 50  VPLPSTTARKHSRNTLCH*YSALLEETGSLQEHLL-VDYLVYATHVSRH 193
           VPLPS+         LC  + +L  +T  + EHLL + Y+   +H + H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEHLLTLVYMPLLSHNASH 255


>SB_46991| Best HMM Match : PE (HMM E-Value=2.6)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +1

Query: 133 FTSRTSACGLFSVCYPRVSAPVKAELRQHFRSLCQD 240
           +  RTSA    +V  P  SA  KAE +Q FRS  QD
Sbjct: 171 YALRTSA-NCLNVDDPLASAEEKAERKQDFRSTLQD 205


>SB_45335| Best HMM Match : Runt (HMM E-Value=0)
          Length = 496

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 471 LRTVHVQLASHAAPYPQESIEPQQPRRLRQPADERNLDHP 352
           ++T   Q+A++          P++PRR R  +DER+ +HP
Sbjct: 119 VKTEPPQVATYCRAIKVTVDGPREPRRHRTRSDERDPNHP 158


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 495 YIGLSKKRLRTVHVQLASHAAPYPQESIEPQQPRRLRQPADE 370
           ++G   K L   +VQ  + A P PQ   +P+Q R  + P  +
Sbjct: 405 HLGPIGKLLENANVQSNNQAVPQPQAQRQPRQNRPKKTPKSQ 446


>SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 404 NSRAGFGSQQTNGILIILCQNHKYGNKIA 318
           NSR GF      G   ILC+ H+  NK++
Sbjct: 303 NSRYGFACVCPRGYTGILCEKHRKRNKVS 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,280,620
Number of Sequences: 59808
Number of extensions: 408498
Number of successful extensions: 1363
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)