Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30623
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 365 ILIILCQNHKYGNKIALNIFNLHNFRKLSK 276
           I+  L  N+KY N    N +N +N+   +K
Sbjct: 314 IISSLSNNYKYSNYNNYNNYNNNNYNNYNK 343


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 499 LLIIRRAATSCRPGTSSYRSST 564
           LL  RR+ + C  GT+S  SST
Sbjct: 166 LLSKRRSVSECSLGTASSTSST 187


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 48 PCRCRAPQPA 77
          PC C+AP+ A
Sbjct: 27 PCNCKAPETA 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,435
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)