Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30623
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 99 2e-21
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 98 4e-21
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A... 95 5e-20
At5g47060.1 68418.m05799 senescence-associated protein-related s... 29 2.6
At4g39840.1 68417.m05645 expressed protein 29 3.5
At4g30840.1 68417.m04375 WD-40 repeat protein family 29 3.5
At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /... 28 4.6
At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /... 28 4.6
At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /... 28 4.6
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER... 28 4.6
At4g17670.1 68417.m02640 senescence-associated protein-related s... 27 8.0
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 27 8.0
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 99.1 bits (236), Expect = 2e-21
Identities = 47/93 (50%), Positives = 58/93 (62%)
Frame = +1
Query: 1 AAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYP 180
+ VEET VR+KAV SL V L +HF+ LV+RLA G+WFT+R SACG+F + YP
Sbjct: 95 STVEETCVREKAVESLCRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACGVFHIAYP 154
Query: 181 RVSAPVKAELRQHFRSLCQDDTPMVAALLPTNL 279
+K ELR + LCQDD PMV TNL
Sbjct: 155 SAPDMLKTELRSLYTQLCQDDMPMVRRAAATNL 187
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
RRAAA LG+FA VE ++K+D++ +F L +DDQDSVR P+D
Sbjct: 180 RRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239
Query: 435 QHVMPTVRALSGDASWRVRYMVAD 506
QH++P + S D SWRVRYMVA+
Sbjct: 240 QHILPVIVNFSQDKSWRVRYMVAN 263
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
R A +L E + V E +++L+P +V L D++ VR PE
Sbjct: 258 RYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAI 317
Query: 435 QHVMPTVRALSGDASWRVRYMVA 503
QH++P V+ LS D+S VR +A
Sbjct: 318 QHILPCVKELSSDSSQHVRSALA 340
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 22 VRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVK 201
+RD A +L+ +AE P+ +H VP V + + R + S+ P + + +
Sbjct: 452 IRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEIT 511
Query: 202 -AELRQHFRSLCQDDTPMVAALLPTNLESL 288
++L + +D P + + L+SL
Sbjct: 512 CSKLLPVVMTASKDRVPNIKFNVAKVLQSL 541
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 98.3 bits (234), Expect = 4e-21
Identities = 46/93 (49%), Positives = 57/93 (61%)
Frame = +1
Query: 1 AAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYP 180
+ VEET VR+KAV SL + L EHF PL +RL+ G+WFT+R SACG+F + YP
Sbjct: 95 STVEETCVREKAVDSLCRIGAQMRESDLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYP 154
Query: 181 RVSAPVKAELRQHFRSLCQDDTPMVAALLPTNL 279
+K ELR + LCQDD PMV TNL
Sbjct: 155 SAPDVLKTELRSIYGQLCQDDMPMVRRAAATNL 187
Score = 75.4 bits (177), Expect = 3e-14
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
RRAAA LG+FA +E ++K+D++ +F L +DDQDSVR P+D
Sbjct: 180 RRAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239
Query: 435 QHVMPTVRALSGDASWRVRYMVAD 506
H++P + S D SWRVRYMVA+
Sbjct: 240 AHILPVIVNFSQDKSWRVRYMVAN 263
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
R A +L E + V E ++DL+P + L D++ VR PE
Sbjct: 258 RYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFCRILNPELAI 317
Query: 435 QHVMPTVRALSGDASWRVRYMVA 503
QH++P V+ LS D+S VR +A
Sbjct: 318 QHILPCVKELSSDSSQHVRSALA 340
>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit A (RCN1) identical to
phosphoprotein phosphatase 2A, regulatory subunit A
GI:1262171 from [Arabidopsis thaliana]
Length = 588
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/91 (50%), Positives = 57/91 (62%)
Frame = +1
Query: 7 VEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRV 186
VEET VR+KAV SL + L E FVPLV+RLAGG+WF +R SACG+F V Y
Sbjct: 97 VEETCVREKAVESLCKIGSQMKENDLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGC 156
Query: 187 SAPVKAELRQHFRSLCQDDTPMVAALLPTNL 279
+ +K ELR + LC+DD PMV +NL
Sbjct: 157 TDVLKTELRATYSQLCKDDMPMVRRAAASNL 187
Score = 67.3 bits (157), Expect = 8e-12
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
RRAAA LG+FA VE ++ ++++ +F L +DDQDSVR P+D
Sbjct: 180 RRAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCV 239
Query: 435 QHVMPTVRALSGDASWRVRYMVAD 506
++P + S D SWRVRYMVA+
Sbjct: 240 ARILPVIVNFSQDKSWRVRYMVAN 263
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +3
Query: 255 RRAAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVRXXXXXXXXXXXXXXTPEDME 434
R A +L E + V + ++DL+P +V L D++ VR PE
Sbjct: 258 RYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAI 317
Query: 435 QHVMPTVRALSGDASWRVRYMVA 503
QH++P V+ LS D+S VR +A
Sbjct: 318 QHILPCVKELSSDSSQHVRSALA 340
>At5g47060.1 68418.m05799 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 177
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 309 IQSPQLSQTLQVCRQQRGDHRSIILTEGAEMLTKFCLHRCR 187
IQ P + +C++ GD+R I + G T FC CR
Sbjct: 92 IQQPHFLDSCFLCKKPLGDNRDIYMYRGD---TPFCSEECR 129
>At4g39840.1 68417.m05645 expressed protein
Length = 451
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 173 HTLNSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTV 15
H LNS ++ S ++ SGTK ++S + SA +++ ++TT+
Sbjct: 123 HKLNSTKSSSNTTKTSSELKKLNSGTKSTNSTSSIKKSADLSKSSSSKNKTTI 175
>At4g30840.1 68417.m04375 WD-40 repeat protein family
Length = 361
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 408 PQQPRRLRQPADERNLDHPLPKSQIWE 328
PQQP L N+++PL +S++WE
Sbjct: 260 PQQPIVLSGVGASENINNPLSESEVWE 286
>At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 535 AYSLLQLYELSATIYRTLQEASPDSARTVGI 443
AYS+ +Y I++ L +SP S T+GI
Sbjct: 133 AYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 163
>At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 446
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 535 AYSLLQLYELSATIYRTLQEASPDSARTVGI 443
AYS+ +Y I++ L +SP S T+GI
Sbjct: 202 AYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 232
>At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 377
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 535 AYSLLQLYELSATIYRTLQEASPDSARTVGI 443
AYS+ +Y I++ L +SP S T+GI
Sbjct: 133 AYSIYSIYSSHVYIHKILAHSSPKSPYTIGI 163
>At2g28700.1 68415.m03488 MADS-box protein-related contains
INTERPRO: IPR002100 MADS-box domain
Length = 329
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 380 QQTNGILIILCQNHKYGNKIALNIF 306
Q TN + +I+ QNH+ N +A N+F
Sbjct: 214 QLTNELQLIVSQNHRLENSLASNLF 238
>At4g17670.1 68417.m02640 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 159
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 300 PQLSQTLQVCRQQRGDHRSIILTEGAEMLTKFCLHRCRD 184
P + +C+++ GD+R I + G T FC CR+
Sbjct: 74 PHFLDSCFLCKKRLGDNRDIFMYRGD---TPFCSEECRE 109
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 504 QQPYIGLSKKRLRTVHVQLASHAAPY-PQESIEPQQPRRLRQPADERNLDHPLP 346
Q+P G + +VQ ++ + Y PQ+ +PQ PR Q ++ N P P
Sbjct: 154 QRPQYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMNEVAPPP 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,211
Number of Sequences: 28952
Number of extensions: 272096
Number of successful extensions: 807
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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