Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30621
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   105   4e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   103   2e-23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.23 
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.1  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   3.7  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   4.9  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.5  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   6.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.6  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.6  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  105 bits (253), Expect = 4e-24
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +3

Query: 27  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 207 MQVCVLGDQQHCDEAK 254
           M +C+LGD    D AK
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +2

Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVL 162



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +1

Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
           L VAVGHVDM  ++LA N+ L+ NFLVSLLKK W
Sbjct: 164 LGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGW 197


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  103 bits (248), Expect = 2e-23
 Identities = 47/76 (61%), Positives = 58/76 (76%)
 Frame = +3

Query: 27  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 207 MQVCVLGDQQHCDEAK 254
           M +C+LGD    D AK
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +2

Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVL
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVL 162



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +1

Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
           L VAVGHV+M+ ++L  N+ L+ NFLVSLLKK W
Sbjct: 164 LGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGW 197


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 9    LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 173
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 313 LFVLIQFFQSLSIHTWHIQGLASSQCCWSPRTQTCIFGRGMYFSFTV 173
           L V +   Q +++  W +  L   Q  ++   QT     G + SFT+
Sbjct: 159 LLVFVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTI 205


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 564 ILSKLIRSHVHMANCYRKTNTFFIWNLMVPLTSSIFCV 451
           +L   +   VH+    R++NT F + L + ++  IFC+
Sbjct: 237 LLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -1

Query: 249 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 70
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 69  RHSRTRRACH 40
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 472 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 365
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 299 SIFSKPQHPYMAHSRFSLVTMLLVSKNAN 213
           S+FSK QHP    S F     L++S + N
Sbjct: 60  SVFSKLQHPSFERSAFFTSVGLILSDDIN 88


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 116
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 60  VNAVLQSSKDKKRNFLETV 116
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 170  GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 69
            G  L  LW IV+ T   L     + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 39  RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 167
           ++ L++ V      SK+  +    T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 36  SRDTLYECVNAVLQSSKDKK--RNFLETVELQIGLKN--YDPQKDKRFSGTVKLKYI 194
           S DT Y  VNA     +DKK  RN   TV  + G +     P ++       K+ YI
Sbjct: 713 SPDTSYSLVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINYI 769


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 363 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 446
           H S RFP    PV T L NSL++  T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,463
Number of Sequences: 5004
Number of extensions: 51676
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)