Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30621
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 112 2e-25
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 111 6e-25
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 109 1e-24
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 109 2e-24
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.033
01_06_0928 + 33085403-33089224 29 2.2
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 3.8
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 3.8
04_03_0376 + 15105874-15106230,15109207-15111573 28 5.1
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 6.7
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 28 6.7
01_06_0930 + 33134385-33138257 27 8.9
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 27 8.9
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 8.9
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 112 bits (269), Expect = 2e-25
Identities = 48/76 (63%), Positives = 63/76 (82%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
M+VC+LGD QH +EA+
Sbjct: 62 MKVCMLGDAQHVEEAE 77
Score = 64.1 bits (149), Expect = 8e-11
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 22/73 (30%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDE 469
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 470 VKGTIKFQMKKVL 508
K T+KFQ+KKVL
Sbjct: 172 TKATVKFQLKKVL 184
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG+ M ++ QNV +S NFLVSLLKK+W
Sbjct: 186 MGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNW 219
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 111 bits (266), Expect = 6e-25
Identities = 47/76 (61%), Positives = 63/76 (82%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
++VC+LGD QH +EA+
Sbjct: 62 LKVCMLGDAQHVEEAE 77
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVL
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVL 157
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG+ M ++ QNV +S NFLVSLLKK+W
Sbjct: 159 MGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNW 192
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 109 bits (263), Expect = 1e-24
Identities = 49/76 (64%), Positives = 61/76 (80%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
M+VC+LGD QH +EA+
Sbjct: 62 MKVCMLGDAQHVEEAE 77
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVL
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVL 157
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M ++ QN+ +S NFLVSLLKK+W
Sbjct: 159 MGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNW 192
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 109 bits (261), Expect = 2e-24
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = +3
Query: 30 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 209
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 210 QVCVLGDQQHCDEAK 254
+VC+LGD QH +EA+
Sbjct: 81 KVCMLGDAQHVEEAE 95
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVL
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVL 175
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M ++ QN+ +S NFLVSLLKK+W
Sbjct: 177 MGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNW 210
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 78 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 254
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 453 RRRLMKSREPLSSK*RRCWSFCSSWPCGH 539
R+ L+ S E L + +RC+ +CS +P GH
Sbjct: 394 RKALLWSYEKLDPRLQRCFLYCSLFPKGH 422
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 503 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 396
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 177 QCRRNACPSVGHSSSDQFEALQSPKS 100
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>04_03_0376 + 15105874-15106230,15109207-15111573
Length = 907
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 471 SREPLSSK*RRCWSFCSSWPCGH 539
S + L K RRC+++CS +P GH
Sbjct: 434 SYQLLDEKVRRCFAYCSIFPRGH 456
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 210 AFSAAVCILALQCRRNACPSVGH 142
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 553 LAQNVHLSNNFLVSLLKKH 609
+ + VHLS NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 456 RRLMKSREPLSSK*RRCWSFCSSWPCGH 539
+ L+ S L S+ +RC+ +CS +P GH
Sbjct: 430 KALLWSYNKLDSRLQRCFLYCSLFPKGH 457
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 456 RRLMKSREPLSSK*RRCWSFCSSWPCGH 539
+ L+ S L S+ +RC+ +CS +P GH
Sbjct: 614 KALLWSYNKLDSRLQRCFLYCSLFPKGH 641
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 368 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 487
++ + +LG N K+ LL + + KIDE++ ++K
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,802
Number of Sequences: 37544
Number of extensions: 339178
Number of successful extensions: 943
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -