Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30621
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 115 3e-26
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 85 5e-17
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 85 5e-17
Z82080-8|CAD92382.3| 404|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z82080-5|CAD92381.1| 98|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL032625-7|CAN86642.1| 404|Caenorhabditis elegans Hypothetical ... 29 2.6
AL023854-1|CAH60790.2| 404|Caenorhabditis elegans Hypothetical ... 29 2.6
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.6
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 8.0
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 115 bits (276), Expect = 3e-26
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 207 MQVCVLGDQQHCDEA 251
M+VCV GDQ H DEA
Sbjct: 62 MKVCVFGDQHHLDEA 76
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVL
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVL 162
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
LSVAVGHV +T +EL N+ LS NFLVSLLKK+W
Sbjct: 164 LSVAVGHVGLTQEELVSNISLSINFLVSLLKKNW 197
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVL
Sbjct: 82 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVL 132
Score = 74.5 bits (175), Expect = 5e-14
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3
Query: 135 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEA 251
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEA 46
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
LSVAVGHV +T +EL N+ LS NFLVSLLKK+W
Sbjct: 134 LSVAVGHVGLTQEELVSNISLSINFLVSLLKKNW 167
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVL
Sbjct: 51 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVL 101
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
LSVAVGHV +T +EL N+ LS NFLVSLLKK+W
Sbjct: 103 LSVAVGHVGLTQEELVSNISLSINFLVSLLKKNW 136
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 207 MQVCVLGDQQHCDEA 251
M+VCV GDQ H DEA
Sbjct: 1 MKVCVFGDQHHLDEA 15
>Z82080-8|CAD92382.3| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 220 FLETSSIVTRLNLECAMYGC 279
FL S+ TR N++CA+YGC
Sbjct: 10 FLSNSAGKTRKNVDCAVYGC 29
>Z82080-5|CAD92381.1| 98|Caenorhabditis elegans Hypothetical
protein W09G3.7b protein.
Length = 98
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 220 FLETSSIVTRLNLECAMYGC 279
FL S+ TR N++CA+YGC
Sbjct: 10 FLSNSAGKTRKNVDCAVYGC 29
>AL032625-7|CAN86642.1| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 220 FLETSSIVTRLNLECAMYGC 279
FL S+ TR N++CA+YGC
Sbjct: 10 FLSNSAGKTRKNVDCAVYGC 29
>AL023854-1|CAH60790.2| 404|Caenorhabditis elegans Hypothetical
protein W09G3.7a protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 220 FLETSSIVTRLNLECAMYGC 279
FL S+ TR N++CA+YGC
Sbjct: 10 FLSNSAGKTRKNVDCAVYGC 29
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 84 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 194
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 368 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 487
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,949
Number of Sequences: 27780
Number of extensions: 303488
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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