Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30621
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 355 IRVTDQADSPFVGSRFEQSW*IPWSSLPP 441
           ++ TD+ D+ + G+RF   + IP   LPP
Sbjct: 423 VQETDKYDA-YYGNRFSGEYEIPAHGLPP 450


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 401 LNKAGKFPGLLSHQE 445
           LNK GK P L++H+E
Sbjct: 573 LNKIGKNPNLVAHRE 587


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 401 LNKAGKFPGLLSHQE 445
           LNK GK P L++H+E
Sbjct: 541 LNKIGKNPNLVAHRE 555


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = -3

Query: 328 QFLDKLFVLIQFFQSLSIHTWHIQGLASSQCCWSP 224
           Q L KL     +   + +H+W       S   W P
Sbjct: 74  QLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKP 108


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 352 GIRVTDQADSPFVGSRFEQ 408
           G+   D  D P+  +RFE+
Sbjct: 151 GVNKMDMTDPPYSEARFEE 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,416
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)