Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30621
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 111 3e-25
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 111 3e-25
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 110 8e-25
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 105 2e-23
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 31 0.60
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.60
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.1
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.2
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam... 29 3.2
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.2
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 28 4.2
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 28 5.6
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 27 7.4
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 27 7.4
At3g58390.1 68416.m06508 eukaryotic release factor 1 family prot... 27 9.8
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 27 9.8
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 111 bits (268), Expect = 3e-25
Identities = 48/76 (63%), Positives = 63/76 (82%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
M++C+LGD QH +EA+
Sbjct: 62 MKICMLGDAQHVEEAE 77
Score = 87.0 bits (206), Expect = 9e-18
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVL
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVL 162
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M +L QNV +S NFLVSLLKK+W
Sbjct: 164 MGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNW 197
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 111 bits (268), Expect = 3e-25
Identities = 48/76 (63%), Positives = 63/76 (82%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
M++C+LGD QH +EA+
Sbjct: 62 MKICMLGDAQHVEEAE 77
Score = 87.0 bits (206), Expect = 9e-18
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVL
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVL 162
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M +L QNV +S NFLVSLLKK+W
Sbjct: 164 MGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNW 197
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 110 bits (264), Expect = 8e-25
Identities = 47/76 (61%), Positives = 62/76 (81%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 206
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 207 MQVCVLGDQQHCDEAK 254
M++C+LGD QH +EA+
Sbjct: 62 MKICMLGDAQHVEEAE 77
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVL
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVL 162
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M ++ QNV +S NFLVSLLKK+W
Sbjct: 164 MGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNW 197
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 105 bits (252), Expect = 2e-23
Identities = 45/77 (58%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +3
Query: 27 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 203
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 204 KMQVCVLGDQQHCDEAK 254
KM++C+LGD QH +EA+
Sbjct: 62 KMKICMLGDAQHVEEAE 78
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/51 (76%), Positives = 46/51 (90%)
Frame = +2
Query: 356 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 508
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVL
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVL 163
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 511 LSVAVGHVDMTPDELAQNVHLSNNFLVSLLKKHW 612
+ VAVG++ M ++ QNV +S NFLVSLLKK+W
Sbjct: 165 MGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNW 198
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 31.1 bits (67), Expect = 0.60
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +3
Query: 6 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 176
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 177 VKLKYIPRPKM-QVCVLGDQQHCDEAKP 257
+K + PK +VCV D +CDE P
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDP 362
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 105 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 218
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 24 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 164
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 205 FGRGMYFSFTVPEKRLSFC 149
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 429
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 555 KLIRSHVHMANCYRKTNTFFIWNL-MVPLTSS 463
K+ RS+ + C+ T+T F+W L ++ LT+S
Sbjct: 17 KIDRSNRQLHRCFASTSTMFLWALFLIALTAS 48
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 183 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 7
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 543 SHVHMANCYRKTNTFFIWNLMVPLTSSI 460
SH + + KTN FIW + VPLT I
Sbjct: 87 SHPEVIDKRIKTNEDFIWTIEVPLTGKI 114
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 553 LAQNVHLSNNFLVSLLKKH 609
+ + VHLS NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 553 LAQNVHLSNNFLVSLLKKH 609
+ + VHLS NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 553 LAQNVHLSNNFLVSLLKKH 609
+ + VHLS NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At3g58390.1 68416.m06508 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 395
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -2
Query: 284 PQHPYMAHSRFSLVTMLLVS---KNANLHFRPRYV 189
P+H +AH R ++ T+L++ +N+++ R +YV
Sbjct: 313 PKHVEVAHERMAIQTLLIIDGLFRNSDVKTRKKYV 347
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 469 SQGNH*VPNEEGVGLSVAVGHV-DMTPDELAQNVHLSNNFLVSLL 600
S NH V NEEGV + V V +V + T EL V+L N L+ LL
Sbjct: 547 SSPNHLVDNEEGVPM-VGVDYVSNETSAELPDIVNLFPNQLLFLL 590
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,311
Number of Sequences: 28952
Number of extensions: 280170
Number of successful extensions: 673
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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