Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30620X
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   109   6e-26
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   109   6e-26
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   2.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   2.9  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   2.9  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   2.9  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    23   6.7  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    23   6.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    23   8.8  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    23   8.8  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   8.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    23   8.8  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    23   8.8  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  109 bits (263), Expect = 6e-26
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKATH 264
           FPM QGVL   RVRLL+ +A H
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGH 81



 Score = 27.1 bits (57), Expect = 0.54
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 255 GHSCYRPRRD 284
           GH CYRPRRD
Sbjct: 80  GHPCYRPRRD 89


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  109 bits (263), Expect = 6e-26
 Identities = 51/82 (62%), Positives = 62/82 (75%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKATH 264
           FPM QGVL   RVRLL+ +A H
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGH 81



 Score = 27.1 bits (57), Expect = 0.54
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 255 GHSCYRPRRD 284
           GH CYRPRRD
Sbjct: 80  GHPCYRPRRD 89


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 39  PGNGMPEVVRSGGRAQASYLLR 104
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 214  PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 56
            P+SS I        H  H+P  +   D+    R C F++ +E   + P +  S
Sbjct: 970  PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   YRSHEVKRFVPGNGMPEV 62
           + SH ++R++P N  PEV
Sbjct: 551 WTSHHLQRYIPKNWFPEV 568


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 3   GIYRSHEVKRFVPGNGMPEVVRSGGRAQASYL 98
           G++ SHE  RF P   +P  ++   R Q  +L
Sbjct: 68  GLFESHENIRFYPIPSLPAYLQPKNRLQFLFL 99


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 234 TAVCQDALFHRESLLVVAASDTKYI 160
           ++  Q ALFH +   V+AA   KY+
Sbjct: 261 SSALQTALFHPDGKRVIAAGRRKYM 285


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 61  LFEVVDEH---KLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGG 183
           ++E V E    K++   EK+  A+ EAD+  D+  G     AGG
Sbjct: 343 IYEAVTEASAPKIKSSAEKKKSADPEADRSNDDSIGVGSIAAGG 386


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 175 RHEVHSPSIHRLTDQPLLRRPCAF 104
           +H +HS   H  T+ PLL  P  F
Sbjct: 264 QHGLHSRLTHFFTNMPLLCGPLIF 287


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 55   QKLFEVVDEHKLRIFYE 105
            Q +FE+++ H  +IF+E
Sbjct: 1225 QTIFEMIESHLSKIFFE 1241


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 89  SLCSSTTSNNFWHPVAGYETF 27
           +LC++TTS++ +  +A Y  +
Sbjct: 279 ALCNATTSSSLFRQIASYGVY 299


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 71  TSNNFWHPVAGYE 33
           T++ FWHP   YE
Sbjct: 258 TTHLFWHPYGSYE 270


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 82  ARPPLRTTSGIPLPGTKRLT 23
           +RP  R + GIP+PG  + T
Sbjct: 231 SRPKQRLSWGIPVPGNSQQT 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,490
Number of Sequences: 5004
Number of extensions: 20516
Number of successful extensions: 60
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)