BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30620X (288 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 82 8e-17 SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 37 0.003 SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 0.83 SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.5 SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 27 3.3 SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 27 3.3 SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3 SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8 SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 26 5.8 SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) 25 7.7 SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7 SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7 SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7 SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) 25 7.7 SB_28463| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.7 >SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) Length = 212 Score = 81.8 bits (193), Expect = 8e-17 Identities = 34/45 (75%), Positives = 39/45 (86%) Frame = +1 Query: 121 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSK 255 EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SK Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46 Score = 30.3 bits (65), Expect = 0.27 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = +3 Query: 150 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGHSCYRPRR 281 + G C W+ RI D+ G P KQ ++ KGHSCYRPRR Sbjct: 3 VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRR 55 >SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) Length = 796 Score = 36.7 bits (81), Expect = 0.003 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = -1 Query: 246 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 97 Q+ + A+ D L H +SL V+ SD + ++LP I + Y H L ++ Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306 >SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) Length = 1365 Score = 28.7 bits (61), Expect = 0.83 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +1 Query: 127 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 210 E D+ G EW+G+V G D QG+ MK Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844 >SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 161 Score = 27.1 bits (57), Expect = 2.5 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 97 FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 198 FY K++ ++ L +EW+ +V +A G DK G Sbjct: 10 FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44 >SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) Length = 874 Score = 26.6 bits (56), Expect = 3.3 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +3 Query: 180 RQRQARIPDETGRPDKQPCSSSDVK 254 + R+ RIP +T PD Q S ++K Sbjct: 80 KSREIRIPTDTTNPDPQMIESQEIK 104 >SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) Length = 1081 Score = 26.6 bits (56), Expect = 3.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 148 HRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLP 41 H ++ + L RR A R+ ACAR P ++ P+P Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733 >SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 129 Score = 26.6 bits (56), Expect = 3.3 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -1 Query: 129 LYFGAHALFVKDTKL-VLVHHFEQLLASRCRVRN 31 LY+ H +F + VL H+ + L R R+RN Sbjct: 72 LYYATHPVFFSSRAVYVLTHNLSKNLGYRARIRN 105 >SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 716 Score = 25.8 bits (54), Expect = 5.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41 L RR A R+ +ACAR P ++ P+P Sbjct: 596 LSRRSLASRRDAKACARAPKMPSAHTPVP 624 >SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) Length = 3342 Score = 25.8 bits (54), Expect = 5.8 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 166 VHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 56 ++ P+IH T +PL RP FR+ + A + +T+ Sbjct: 2683 IYGPTIHIHTIKPLSARPQVFRQPERSDAHENMSSTA 2719 >SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1) Length = 740 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41 L RR A R+ ACAR P ++ P+P Sbjct: 491 LSRRSLASRRDARACARAPKMPSAHTPVP 519 >SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 83 Score = 25.4 bits (53), Expect = 7.7 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = -3 Query: 187 RCRQRHEVHSPSIHRLTDQPLLRRPCA 107 + + H H+ SIH L P+ PC+ Sbjct: 39 KLEEEHIAHTDSIHNLPAMPVSLSPCS 65 >SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 660 Score = 25.4 bits (53), Expect = 7.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +2 Query: 32 FRTRQRDARSCSKWW 76 F R+R R CS+WW Sbjct: 636 FGWRRRPKRDCSRWW 650 >SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2126 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 183 QRQARIPDETGRPDKQPCSSSDVKGHSCYR 272 +R+ D T RPD++ S S VK H+ R Sbjct: 1097 RREVDNEDTTRRPDERNSSRSPVKAHTVTR 1126 >SB_36025| Best HMM Match : LHC (HMM E-Value=2.9) Length = 671 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41 L RR A R+ ACAR P ++ P+P Sbjct: 410 LSRRSLASRRDARACARAPKMPSAHTPVP 438 >SB_28463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 82 Score = 25.4 bits (53), Expect = 7.7 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = -3 Query: 115 PCAFRKRYEACARPPL 68 PC RKRY A PPL Sbjct: 22 PCKLRKRYAALNLPPL 37 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,496,004 Number of Sequences: 59808 Number of extensions: 183230 Number of successful extensions: 543 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 543 length of database: 16,821,457 effective HSP length: 70 effective length of database: 12,634,897 effective search space used: 315872425 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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