Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30620X
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               82   8e-17
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.003
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   0.83 
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  27   3.3  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   3.3  
SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  26   5.8  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   25   7.7  
SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)                       25   7.7  
SB_28463| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.7  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 81.8 bits (193), Expect = 8e-17
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +1

Query: 121 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSK 255
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SK
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46



 Score = 30.3 bits (65), Expect = 0.27
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +3

Query: 150 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGHSCYRPRR 281
           + G C    W+    RI    D+ G P KQ   ++        KGHSCYRPRR
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRR 55


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 246 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 97
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 127 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 210
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 97  FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 198
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 180 RQRQARIPDETGRPDKQPCSSSDVK 254
           + R+ RIP +T  PD Q   S ++K
Sbjct: 80  KSREIRIPTDTTNPDPQMIESQEIK 104


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 148 HRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLP 41
           H ++ + L RR  A R+   ACAR P   ++  P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733


>SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 129 LYFGAHALFVKDTKL-VLVHHFEQLLASRCRVRN 31
           LY+  H +F     + VL H+  + L  R R+RN
Sbjct: 72  LYYATHPVFFSSRAVYVLTHNLSKNLGYRARIRN 105


>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41
           L RR  A R+  +ACAR P   ++  P+P
Sbjct: 596 LSRRSLASRRDAKACARAPKMPSAHTPVP 624


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 166  VHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 56
            ++ P+IH  T +PL  RP  FR+   + A   + +T+
Sbjct: 2683 IYGPTIHIHTIKPLSARPQVFRQPERSDAHENMSSTA 2719


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41
           L RR  A R+   ACAR P   ++  P+P
Sbjct: 491 LSRRSLASRRDARACARAPKMPSAHTPVP 519


>SB_27755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 187 RCRQRHEVHSPSIHRLTDQPLLRRPCA 107
           +  + H  H+ SIH L   P+   PC+
Sbjct: 39  KLEEEHIAHTDSIHNLPAMPVSLSPCS 65


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 32  FRTRQRDARSCSKWW 76
           F  R+R  R CS+WW
Sbjct: 636 FGWRRRPKRDCSRWW 650


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 183  QRQARIPDETGRPDKQPCSSSDVKGHSCYR 272
            +R+    D T RPD++  S S VK H+  R
Sbjct: 1097 RREVDNEDTTRRPDERNSSRSPVKAHTVTR 1126


>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
          Length = 671

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 LLRRPCAFRKRYEACARPPLRTTSGIPLP 41
           L RR  A R+   ACAR P   ++  P+P
Sbjct: 410 LSRRSLASRRDARACARAPKMPSAHTPVP 438


>SB_28463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 115 PCAFRKRYEACARPPL 68
           PC  RKRY A   PPL
Sbjct: 22  PCKLRKRYAALNLPPL 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,004
Number of Sequences: 59808
Number of extensions: 183230
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)