Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30620X
(288 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 112 4e-26
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 111 1e-25
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 29 0.52
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 0.69
At4g31240.2 68417.m04435 expressed protein 27 2.1
At4g31240.1 68417.m04434 expressed protein 27 2.1
At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof... 27 2.8
At5g54550.1 68418.m06791 expressed protein contains Pfam profile... 26 3.7
At1g08490.1 68414.m00940 cysteine desulfurase, putative similar ... 26 4.8
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 25 8.4
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ... 25 8.4
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ... 25 8.4
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC... 25 8.4
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r... 25 8.4
At1g21390.1 68414.m02676 expressed protein 25 8.4
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 112 bits (269), Expect = 4e-26
Identities = 50/81 (61%), Positives = 61/81 (75%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKAT 261
FPMKQGVLT RVRLL+ + T
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 111 bits (266), Expect = 1e-25
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKAT 261
FPMKQGVLT RVRLL+ + T
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 55 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 150
+KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 40 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 207
P CQ + V D + FYEK G E+ + E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At4g31240.2 68417.m04435 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
>At4g31240.1 68417.m04434 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
>At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 360
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77
P S G L R E H+P I RL + L P A R+ ++C R
Sbjct: 202 PGSGGHLIGSWDPRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 247
>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 359
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77
P S G L R E H+P I RL + L P A R+ ++C R
Sbjct: 200 PGSGGHLIGSWDLRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 245
>At1g08490.1 68414.m00940 cysteine desulfurase, putative similar to
nitrogen fixation protein (nifS) GB:D64004 GI:1001701
from [Synechocystis sp]; contains TIGRFAM TIGR01364:
phosphoserine aminotransferase; contains Pfam PF00266:
aminotransferase, class V
Length = 463
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 93 TKLVLVHHFEQLLASRCRVRNV*L--HDCG 10
TKLV VHH +LAS + + + HD G
Sbjct: 214 TKLVAVHHVSNVLASSLPIEEIVVWAHDVG 243
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 133 DQLGDEWKGYVLRVAGGNDKQG 198
D +G+ WKG+V + DK G
Sbjct: 664 DSVGEGWKGFVYALESMYDKDG 685
>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 219 DALFHRESLLVVAASDTKYIALP 151
DA++ R LL AA DTK ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357
>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 440
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 219 DALFHRESLLVVAASDTKYIALP 151
DA++ R LL AA DTK ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357
>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
sigma factor 3 (SIG3) identical to sigma factor SigC
[Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
[Arabidopsis thaliana] GI:2353175, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398853; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 571
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 136 DQPLLRRPCAFRKRYEACARPPLRTTSGIPL 44
D P +RRP +RK+ E +R ++G+ +
Sbjct: 257 DVPRVRRPPKYRKKRERISRNETEMSTGVKI 287
>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1122
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 280 RRGL*HEWPLTSEDEHGCL 224
+ G EWPL S+DE G L
Sbjct: 327 KNGWSKEWPLASDDERGKL 345
>At1g21390.1 68414.m02676 expressed protein
Length = 248
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 156 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGHSCYRPRRD 284
G+C+ WR + P RP+ S D K + R +R+
Sbjct: 28 GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRE 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,432,665
Number of Sequences: 28952
Number of extensions: 119180
Number of successful extensions: 366
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -