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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30620X
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   112   4e-26
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             111   1e-25
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   0.52 
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   0.69 
At4g31240.2 68417.m04435 expressed protein                             27   2.1  
At4g31240.1 68417.m04434 expressed protein                             27   2.1  
At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof...    27   2.8  
At5g54550.1 68418.m06791 expressed protein contains Pfam profile...    26   3.7  
At1g08490.1 68414.m00940 cysteine desulfurase, putative similar ...    26   4.8  
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    25   8.4  
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ...    25   8.4  
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ...    25   8.4  
At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC...    25   8.4  
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    25   8.4  
At1g21390.1 68414.m02676 expressed protein                             25   8.4  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  112 bits (269), Expect = 4e-26
 Identities = 50/81 (61%), Positives = 61/81 (75%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKAT 261
           FPMKQGVLT  RVRLL+ + T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  111 bits (266), Expect = 1e-25
 Identities = 49/81 (60%), Positives = 61/81 (75%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKAT 261
           FPMKQGVLT  RVRLL+ + T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 55  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 150
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 207
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 360

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77
           P S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 202 PGSGGHLIGSWDPRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 247


>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 359

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77
           P S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 200 PGSGGHLIGSWDLRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 245


>At1g08490.1 68414.m00940 cysteine desulfurase, putative similar to
           nitrogen fixation protein (nifS) GB:D64004 GI:1001701
           from [Synechocystis sp]; contains TIGRFAM TIGR01364:
           phosphoserine aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 463

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 93  TKLVLVHHFEQLLASRCRVRNV*L--HDCG 10
           TKLV VHH   +LAS   +  + +  HD G
Sbjct: 214 TKLVAVHHVSNVLASSLPIEEIVVWAHDVG 243


>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 133 DQLGDEWKGYVLRVAGGNDKQG 198
           D +G+ WKG+V  +    DK G
Sbjct: 664 DSVGEGWKGFVYALESMYDKDG 685


>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 219 DALFHRESLLVVAASDTKYIALP 151
           DA++ R  LL  AA DTK  ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357


>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 219 DALFHRESLLVVAASDTKYIALP 151
           DA++ R  LL  AA DTK  ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357


>At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) /
           sigma factor 3 (SIG3) identical to sigma factor SigC
           [Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3)
           [Arabidopsis thaliana] GI:2353175, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2398853; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 571

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 136 DQPLLRRPCAFRKRYEACARPPLRTTSGIPL 44
           D P +RRP  +RK+ E  +R     ++G+ +
Sbjct: 257 DVPRVRRPPKYRKKRERISRNETEMSTGVKI 287


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 280 RRGL*HEWPLTSEDEHGCL 224
           + G   EWPL S+DE G L
Sbjct: 327 KNGWSKEWPLASDDERGKL 345


>At1g21390.1 68414.m02676 expressed protein
          Length = 248

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 156 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGHSCYRPRRD 284
           G+C+   WR    + P    RP+     S D K  +  R +R+
Sbjct: 28  GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRE 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,432,665
Number of Sequences: 28952
Number of extensions: 119180
Number of successful extensions: 366
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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