BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30620X (288 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 112 4e-26 At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 111 1e-25 At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 29 0.52 At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 0.69 At4g31240.2 68417.m04435 expressed protein 27 2.1 At4g31240.1 68417.m04434 expressed protein 27 2.1 At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof... 27 2.8 At5g54550.1 68418.m06791 expressed protein contains Pfam profile... 26 3.7 At1g08490.1 68414.m00940 cysteine desulfurase, putative similar ... 26 4.8 At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 25 8.4 At4g24670.2 68417.m03532 alliinase family protein contains Pfam ... 25 8.4 At4g24670.1 68417.m03531 alliinase family protein contains Pfam ... 25 8.4 At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC... 25 8.4 At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r... 25 8.4 At1g21390.1 68414.m02676 expressed protein 25 8.4 >At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal protein S6, Arabidopsis thaliana, PID:g2662469 Length = 250 Score = 112 bits (269), Expect = 4e-26 Identities = 50/81 (61%), Positives = 61/81 (75%) Frame = +1 Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198 MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60 Query: 199 FPMKQGVLTNSRVRLLMSKAT 261 FPMKQGVLT RVRLL+ + T Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81 >At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) Length = 249 Score = 111 bits (266), Expect = 1e-25 Identities = 49/81 (60%), Positives = 61/81 (75%) Frame = +1 Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198 MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 199 FPMKQGVLTNSRVRLLMSKAT 261 FPMKQGVLT RVRLL+ + T Sbjct: 61 FPMKQGVLTPGRVRLLLHRGT 81 >At1g21740.1 68414.m02721 expressed protein contains Pfam domains, PF04782: Protein of unknown function (DUF632) and PF04783: Protein of unknown function (DUF630) Length = 953 Score = 29.1 bits (62), Expect = 0.52 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +1 Query: 55 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 150 +KL+ EV DE KLR+ YE++ + D LG E Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634 >At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / glyoxalase I, putative similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from [Brassica oleracea] Length = 350 Score = 28.7 bits (61), Expect = 0.69 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 40 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 207 P CQ + V D + FYEK G E+ + E+K Y + + G + FP+ Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270 >At4g31240.2 68417.m04435 expressed protein Length = 392 Score = 27.1 bits (57), Expect = 2.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112 L H VVA + +K + + I LYFGAH Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213 >At4g31240.1 68417.m04434 expressed protein Length = 392 Score = 27.1 bits (57), Expect = 2.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112 L H VVA + +K + + I LYFGAH Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213 >At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile PF03478: Protein of unknown function (DUF295) Length = 360 Score = 26.6 bits (56), Expect = 2.8 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77 P S G L R E H+P I RL + L P A R+ ++C R Sbjct: 202 PGSGGHLIGSWDPRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 247 >At5g54550.1 68418.m06791 expressed protein contains Pfam profile PF03478: Protein of unknown function (DUF295) Length = 359 Score = 26.2 bits (55), Expect = 3.7 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 214 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 77 P S G L R E H+P I RL + L P A R+ ++C R Sbjct: 200 PGSGGHLIGSWDLRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 245 >At1g08490.1 68414.m00940 cysteine desulfurase, putative similar to nitrogen fixation protein (nifS) GB:D64004 GI:1001701 from [Synechocystis sp]; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V Length = 463 Score = 25.8 bits (54), Expect = 4.8 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = -1 Query: 93 TKLVLVHHFEQLLASRCRVRNV*L--HDCG 10 TKLV VHH +LAS + + + HD G Sbjct: 214 TKLVAVHHVSNVLASSLPIEEIVVWAHDVG 243 >At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein similar to beta-glucan-elicitor receptor GI:1752734 from [Glycine max] Length = 745 Score = 25.0 bits (52), Expect = 8.4 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 133 DQLGDEWKGYVLRVAGGNDKQG 198 D +G+ WKG+V + DK G Sbjct: 664 DSVGEGWKGFVYALESMYDKDG 685 >At4g24670.2 68417.m03532 alliinase family protein contains Pfam profiles: PF04864 allinase C-terminal domain, PF04863 alliinase EGF-like domain Length = 440 Score = 25.0 bits (52), Expect = 8.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 219 DALFHRESLLVVAASDTKYIALP 151 DA++ R LL AA DTK ++P Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357 >At4g24670.1 68417.m03531 alliinase family protein contains Pfam profiles: PF04864 allinase C-terminal domain, PF04863 alliinase EGF-like domain Length = 440 Score = 25.0 bits (52), Expect = 8.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 219 DALFHRESLLVVAASDTKYIALP 151 DA++ R LL AA DTK ++P Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357 >At3g53920.1 68416.m05957 RNA polymerase sigma subunit SigC (sigC) / sigma factor 3 (SIG3) identical to sigma factor SigC [Arabidopsis thaliana] GI:5478585, sigma factor 3 (SIG3) [Arabidopsis thaliana] GI:2353175, plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] GI:2398853; contains Pfam profiles PF04545: Sigma-70, region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2 Length = 571 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 136 DQPLLRRPCAFRKRYEACARPPLRTTSGIPL 44 D P +RRP +RK+ E +R ++G+ + Sbjct: 257 DVPRVRRPPKYRKKRERISRNETEMSTGVKI 287 >At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1122 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 280 RRGL*HEWPLTSEDEHGCL 224 + G EWPL S+DE G L Sbjct: 327 KNGWSKEWPLASDDERGKL 345 >At1g21390.1 68414.m02676 expressed protein Length = 248 Score = 25.0 bits (52), Expect = 8.4 Identities = 12/43 (27%), Positives = 19/43 (44%) Frame = +3 Query: 156 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGHSCYRPRRD 284 G+C+ WR + P RP+ S D K + R +R+ Sbjct: 28 GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRE 70 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,432,665 Number of Sequences: 28952 Number of extensions: 119180 Number of successful extensions: 366 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 361 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 366 length of database: 12,070,560 effective HSP length: 69 effective length of database: 10,072,872 effective search space used: 261894672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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