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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30619X
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   151   5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   151   5e-38
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   149   2e-37
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   149   2e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   149   2e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    96   4e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    43   3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    41   1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    41   1e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    30   0.27 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.5  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   5.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.6  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  151 bits (367), Expect = 5e-38
 Identities = 73/78 (93%), Positives = 76/78 (97%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 201 IQKESTLHLVLRLRGGAK 254
           IQKESTLHLVLRLRGG K
Sbjct: 61  IQKESTLHLVLRLRGGGK 78



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%)
 Frame = +2

Query: 254 ERKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 433
           +RKKK Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR
Sbjct: 79  KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136

Query: 434 HYCGKCHSTM 463
            YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  151 bits (367), Expect = 5e-38
 Identities = 73/78 (93%), Positives = 76/78 (97%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 201 IQKESTLHLVLRLRGGAK 254
           IQKESTLHLVLRLRGG K
Sbjct: 61  IQKESTLHLVLRLRGGGK 78



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%)
 Frame = +2

Query: 254 ERKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 433
           +RKKK Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR
Sbjct: 79  KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136

Query: 434 HYCGKCHSTM 463
            YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/76 (94%), Positives = 75/76 (98%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 201 IQKESTLHLVLRLRGG 248
           IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 41/77 (53%), Positives = 59/77 (76%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           M I VKTLTGK I L+++P+D +  +K ++++KEGIPP+QQRLI+AGKQ+ D +    Y+
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60

Query: 201 IQKESTLHLVLRLRGGA 251
           ++  S LHLVL LRGG+
Sbjct: 61  LEGGSVLHLVLALRGGS 77


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +3

Query: 48  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 221
           GK   LE+EP++T   +K ++     +PP +Q++I  G QL+D   L    I+  +TL
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 197
           M +  K L  +   +    +DT I  +K KIQ ++     +Q+LI++G+ L D +T+ +Y
Sbjct: 1   MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60

Query: 198 NIQKE 212
           NI+++
Sbjct: 61  NIKEQ 65


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           + + +K    +   + V+   ++  +K  I     I   +QRLI+AG+ L+D  +L  Y 
Sbjct: 4   ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63

Query: 201 IQKESTLHLVLRL 239
           IQ   ++HLV  L
Sbjct: 64  IQDGHSIHLVKTL 76


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 200
           +++      GK + ++  P DT+ + K  +  + G  P +  L       +D  TL+DY 
Sbjct: 2   IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61

Query: 201 IQKESTLHL 227
           I    +L +
Sbjct: 62  IHDGMSLEM 70


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 210 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 124
           PS +  PRG V+ P+  ++R + +   GF
Sbjct: 17  PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 526 SSRERSYRLEGTYLFVVVFEDHRAVTLPAV 437
           +S + SY L  TYL    F++HR  +  AV
Sbjct: 149 NSHQNSYSLNETYLSYDFFDNHRGASSSAV 178


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 323 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 481
           V+R Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 454 VTLPAVVTVLHHRHEHSGAALLAC 383
           VTL A+ T+L + H H    L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 132 PNQQRLIFAGKQLEDGRTLSDYNI 203
           PNQ     AGK+L+  R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,889
Number of Sequences: 5004
Number of extensions: 44286
Number of successful extensions: 119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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