Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30617X
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    53   1e-09
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    50   6e-09
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    50   6e-09
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    39   2e-05
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.48 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.5  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   2.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   4.5  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 52.8 bits (121), Expect = 1e-09
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +  SIF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 418 PDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 494 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 570 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602



 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 646 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 50.4 bits (115), Expect = 6e-09
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 10  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42



 Score = 41.1 bits (92), Expect = 4e-06
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKE 169
           P +  SIF  +QL DGRTLSDYNIQKE
Sbjct: 86  PDQQRSIFAGKQLEDGRTLSDYNIQKE 112


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 38.7 bits (86), Expect = 2e-05
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKE 169
           P +   IF  +QL DGRTLSDYNIQKE
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKE 64


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 395 SSDGPHHRHEHSGADCSPVHSRRRRWILPVLVT 297
           S++ PH +H+H GA        RRR   P +VT
Sbjct: 20  SAEHPH-QHQHYGAAVQVPQGGRRRAARPGVVT 51


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 203 HHEASTPGGGWIPSGYCSPR 144
           HH    P GG  P G   PR
Sbjct: 63  HHYGGPPSGGQPPQGMPYPR 82


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 286 RFYKVTRTGKIHRLRRECTG-EQSA 357
           +F KVT    +  + R CTG E+SA
Sbjct: 113 KFIKVTTKAPLECMCRPCTGVEESA 137


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 66  EMVSKSHCRSGTSPSLVWS 122
           EM    HCR   S S+ WS
Sbjct: 70  EMTLAHHCRFKFSSSVGWS 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,446
Number of Sequences: 336
Number of extensions: 1674
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)