Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30617X
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    59   3e-10
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    50   1e-07
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    50   1e-07
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    50   1e-07
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    50   1e-07
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    50   1e-07
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   3.3  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   3.3  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    24   7.6  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    24   7.6  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    24   10.0 

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +2

Query: 14  MAKSKNHTNHNQNRKAHRNGIKKPLPIRHESI 109
           MAKSKNHTNHNQN+KAHRNGIK+P   R++S+
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSL 32


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 286 RFYKVTRTGKIHRLRREC 339
           ++YKV   G + RLRREC
Sbjct: 104 KYYKVEDDGSVKRLRREC 121


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 89  PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
           P +   IF  +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38  PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 286 RFYKVTRTGKIHRLRREC 339
           ++YKV   G + RLRREC
Sbjct: 104 KYYKVEDDGSVKRLRREC 121


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 26  KNHTNHNQNRKAHRNGIKKPLPI-RHESIFGMEQLVDGRTLSDYNIQKESTL 178
           K H+ +  ++K+++NG KK   + +  S     +L   R L   N++ E+++
Sbjct: 178 KTHSLNKASKKSNKNGDKKRKHVSKSNSKHAKHELRTNRMLDGENVKSETSV 229


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  ITKTAKLTEMVSKSHCRSGT 101
           IT   K+ E VSK HC+ GT
Sbjct: 149 ITGLRKILEHVSKMHCQLGT 168


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 36  QIITKTAKLTEMVSKSHCRSGTSPSLVWSSW*MDVPSRTTISRRN 170
           +I++KT      VS  HC        VWSS   +   R  +++ N
Sbjct: 192 EIMSKTRAFVMFVSLKHCEDCFHWEAVWSSITRNTDERLKMAQVN 236


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 29  NHTNHNQNRKAHRNGIKKPLPIRHESIFGMEQLVDGRTLS-DYNIQKESTLHLV 187
           N  NH    +  RNGI   L +  ES  G    V+    S D N + + T+  V
Sbjct: 102 NDFNHQHYSRVCRNGIDINLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFV 155


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 163 EGIHPPPGVEASWW 204
           EG+H P G +  WW
Sbjct: 122 EGLHAPIGKQQIWW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,282
Number of Sequences: 5004
Number of extensions: 26067
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)