Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30617X
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-07
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 50 5e-07
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 50 5e-07
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 50 5e-07
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 37 0.007
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_19758| Best HMM Match : Homeobox (HMM E-Value=1.6e-20) 27 5.6
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 27 5.6
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08) 26 9.8
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11) 26 9.8
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 26 9.8
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/50 (54%), Positives = 30/50 (60%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYST 238
P + IF +QL DGRTLSDYNIQKESTLHLV NY+T
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTT 87
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 286 RFYKVTRTGKIHRLRRECTGE 348
++YKV GKI RLRREC E
Sbjct: 104 KYYKVDENGKITRLRRECPSE 124
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 418 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 494 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 34.3 bits (75), Expect = 0.037
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 107 IFGMEQLVDGRTLSDYNIQKESTLHL 184
++ E+LVD R+L+DYNI++ S LHL
Sbjct: 119 LYEEEELVDNRSLADYNIKQGSILHL 144
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 50.4 bits (115), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTLSDYNIQKESTLHLV
Sbjct: 4 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQK 166
P + IF +QL DGRTLSDYNIQK
Sbjct: 116 PDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 56 KAHRNGIKKPLPIRHESIFGM 118
K HRNGIKKP R+ S+ G+
Sbjct: 175 KWHRNGIKKPRTNRYPSLKGV 195
>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 112 WYGAAGRWTYPLGLQYPEGIHPPP 183
+Y G W + L QY HPPP
Sbjct: 76 YYYGNGNWDWELDNQYDNDNHPPP 99
>SB_19758| Best HMM Match : Homeobox (HMM E-Value=1.6e-20)
Length = 228
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 78 KSHCRSG-TSPSLV-WSSW*MDVPSRTTISRRN 170
+ HC TSP +V +SSW + +P R+T +R N
Sbjct: 74 EEHCEEAYTSPEVVPYSSW-LCIPGRSTSTREN 105
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 26 KNHTNHNQNRKAHRNGIKKPLPIRH 100
K+H H ++KAH + P PI H
Sbjct: 253 KHHHKHRHHKKAHHSDPAVPPPIEH 277
>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 35 TNHNQNRKAHRNGIKKPLPIRHESIFGMEQLV 130
T+ QNR+ HRN I + L +R +S E LV
Sbjct: 351 TDGQQNRRRHRNKIDRVLGMRQKSNSEYEFLV 382
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 109 LWYGAAGRWTYPLGLQYPEGIHPPPGVEAS 198
++ AG W G++Y + I PPPG + +
Sbjct: 10 IYVDVAGEWKLG-GVEYVQPIEPPPGADVT 38
>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
Length = 294
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 56 CGFGYDLYDSLT 21
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
Length = 538
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 56 CGFGYDLYDSLT 21
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 127 GRWTYPLGLQYPEGIHPPPG 186
G++T+ GLQ P+G PPG
Sbjct: 233 GKFTFKQGLQGPKGERGPPG 252
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 192 GFVVALRNARRRITPHPRRSSQEEEGQTSRPQVLQGDENG*DP 320
GF V+ A+ RIT RS +E GQ + ++ Q ++ P
Sbjct: 482 GFTVSCYTAKNRITQRIIRSCREGRGQKTFNELYQEEQANFQP 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,877
Number of Sequences: 59808
Number of extensions: 225051
Number of successful extensions: 716
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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