Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30617X
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   9.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 RNARRRITPHPRRSSQEEEGQTSRPQVL 293
           RN RR+ T   R  + EEE Q  + Q +
Sbjct: 127 RNDRRKKTFAAREDNDEEEAQKPKEQYI 154


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 20  KSKNHTNHNQNRKAH 64
           +  NH NHN N+  H
Sbjct: 420 QDNNHYNHNHNQARH 434


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 383 PHHRHEHSGADCSPVHSRR 327
           PHH H H       +H R+
Sbjct: 350 PHHHHHHQTQSLQHLHYRQ 368


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 182 GGGWIPSGYCSPRGYVHLPA 123
           GG   P GY   +G+VHL A
Sbjct: 77  GGLEEPKGYTLFKGFVHLGA 96


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 8   IKMAKSKNHTNHNQNRKAHRNGIKKPL 88
           I + +  +HT +  +    RNG K PL
Sbjct: 140 ISVVQKVSHTLYKLDEIIERNGDKPPL 166


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 160 DIVVREGTSIYQLLHTKDGLV 98
           DI+++EGT   ++   ++G+V
Sbjct: 481 DIIIKEGTIGSKMYFIQEGIV 501


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 160 DIVVREGTSIYQLLHTKDGLV 98
           DI+++EGT   ++   ++G+V
Sbjct: 449 DIIIKEGTIGSKMYFIQEGIV 469


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 154 QYPEGIHPPPGVEASWW 204
           +YP    PPP  + S W
Sbjct: 658 EYPPDSDPPPPDDISGW 674


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -2

Query: 383 PHHRHEHS 360
           PHH H H+
Sbjct: 430 PHHHHSHA 437


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +2

Query: 29  NHTNHNQNRKAHRNGIKKPLPIRHESIFGMEQL 127
           N+ N+N N   + N         + +I  +EQ+
Sbjct: 332 NYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 106 GLVPDRQWLFDTIS 65
           G++  RQW FD  S
Sbjct: 377 GVLGQRQWQFDVYS 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,092
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)