Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30617X
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 54 3e-08
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 54 4e-08
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 51 3e-07
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 50 6e-07
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 50 8e-07
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 49 1e-06
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 49 1e-06
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 49 1e-06
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 49 1e-06
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 49 1e-06
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 49 1e-06
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 49 1e-06
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 49 1e-06
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 49 1e-06
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 49 1e-06
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 49 1e-06
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 49 1e-06
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 49 1e-06
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 49 1e-06
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 49 1e-06
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 49 1e-06
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 49 1e-06
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 49 1e-06
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 49 1e-06
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 49 1e-06
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 40 6e-04
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 31 0.37
At3g63020.1 68416.m07079 hypothetical protein predicted protein,... 29 1.5
At3g25950.1 68416.m03234 hypothetical protein 28 2.6
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 8.0
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 8.0
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 11 KMAKSKNHTNHNQNRKAHRNGIKKPLPIRHESIFGME 121
+MAKSKNHT HNQ+ KAH+NGIKKP RH GM+
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMD 58
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 54.0 bits (124), Expect = 4e-08
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 14 MAKSKNHTNHNQNRKAHRNGIKKPLPIRHESIFGME 121
MAKSKNHT HNQ+ KAH+NGIKKP RH GM+
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMD 36
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 50.8 bits (116), Expect = 3e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +2
Query: 86 LPIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
LP + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 115 LPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 148
Score = 47.2 bits (107), Expect = 4e-06
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 KRIKMAKSKNHTNHNQNRKAHRNGIKKPLPIRHES-IFGMEQLVDGRTLSDYNIQKESTL 178
K I + + + HN K K+ +P+ + IF +QL DG TL+DYNIQKESTL
Sbjct: 13 KTITLDVETSDSIHNVKAKIQN---KEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTL 69
Query: 179 HLV 187
HLV
Sbjct: 70 HLV 72
Score = 43.2 bits (97), Expect = 7e-05
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 KRIKMAKSKNHTNHNQNRKAH-RNGIKKPLPIRHESIFGMEQLVDGRTLSDYNIQKESTL 178
KRI + T N + GI+ P P IF ++L DG TL+DY+IQKESTL
Sbjct: 329 KRINLEVESWDTIENVKAMVQDKEGIQ-PQPNLQRLIFLGKELKDGCTLADYSIQKESTL 387
Query: 179 HLV 187
HLV
Sbjct: 388 HLV 390
Score = 39.5 bits (88), Expect = 8e-04
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 107 IFGMEQLVDGRTLSDYNIQKESTLHL 184
+F QL DGRTL DYNI+ ESTLHL
Sbjct: 436 LFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 39.1 bits (87), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 KRIKMAKSKNHTNHNQNRKA-HRNGIKKPLPIRHESIFGMEQLVDGRTLSDYNIQKESTL 178
K I + + T N K H+ GI PL R IFG LV RTL DYNIQK ST+
Sbjct: 486 KTITLEVESSDTIDNVKVKIQHKVGI--PLD-RQRLIFGGRVLVGSRTLLDYNIQKGSTI 542
Query: 179 H 181
H
Sbjct: 543 H 543
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 77 KKPLPIR-HESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
K+ +P+ H IF + L GRTL+ YNIQK STL+LV
Sbjct: 275 KERIPMDLHRLIFAGKPLEGGRTLAHYNIQKGSTLYLV 312
Score = 37.1 bits (82), Expect = 0.004
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 KRIKMAKSKNHTNHNQNRKAH-RNGIKKPLPIRHESIFGMEQLVDGRTLSDYNIQKESTL 178
K I + + T N K + GIK P + IF +QL DG TL DY+I K+STL
Sbjct: 562 KTIILEVESSDTIANVKEKIQVKEGIK---PDQQMLIFFGQQLEDGVTLGDYDIHKKSTL 618
Query: 179 HLV 187
+LV
Sbjct: 619 YLV 621
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 89 PIRHESIFGMEQLV--DGRTLSDYNIQKESTLHL 184
P IF E+L D RTL+DY I+ STL L
Sbjct: 197 PDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCL 230
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 50.0 bits (114), Expect = 6e-07
Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 KRIKMAKSKNHTNHNQNRKAH-RNGIKKPLPIRHESIFGMEQLVDGRTLSDYNIQKESTL 178
K I + + T N K + GI P + IF +QL DGRTL+DYNIQKESTL
Sbjct: 165 KTIALEVESSDTTDNVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLADYNIQKESTL 221
Query: 179 HLV 187
HLV
Sbjct: 222 HLV 224
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 116 PDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
Score = 44.4 bits (100), Expect = 3e-05
Identities = 26/47 (55%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 NRKAHRNGIKKPLPIRHESIFGMEQLVDGR-TLSDYNIQKESTLHLV 187
N KA ++ P + IF EQL DG TL+DYNIQKESTLHLV
Sbjct: 255 NVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLV 301
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 107 IFGMEQLVDGRTLSDYNIQKESTLHL 184
IF + L DGRTL+DY+IQK+S LHL
Sbjct: 46 IFSGKLLDDGRTLADYSIQKDSILHL 71
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 49.6 bits (113), Expect = 8e-07
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 50 NRKAHRNGIKKPLPIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
N KA I+ P +H IF +QL DGRTL+DYN+Q++STLHL+
Sbjct: 25 NVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLL 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 46.4 bits (105), Expect = 7e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +Q DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQHEDGRTLADYNIQKESTLHLV 222
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 342 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 190 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 266 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 29.9 bits (64), Expect = 0.65
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 286 RFYKVTRTGKIHRLRREC 339
+FYK+ +GK+ RLR+EC
Sbjct: 104 QFYKIDGSGKVQRLRKEC 121
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 286 RFYKVTRTGKIHRLRREC 339
+FYKV +GK+ RLR+EC
Sbjct: 104 QFYKVDGSGKVQRLRKEC 121
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 32.7 bits (71), Expect = 0.093
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P++ I+ +QL D +T DY I+ S LHLV
Sbjct: 114 PVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 189 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 221
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+D NIQKESTLHLV
Sbjct: 114 PDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLV 145
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 35.9 bits (79), Expect = 0.010
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P++ I+ +QL D +T DYNI+ S LHLV
Sbjct: 114 PVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 146
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P + IF +QL DGRTL+DYNIQKESTLHLV
Sbjct: 38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 286 RFYKVTRTGKIHRLRRECTGEQSAP 360
+FYKV +GK+ RL++EC P
Sbjct: 104 QFYKVDGSGKVQRLKKECPSVSCGP 128
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 39.9 bits (89), Expect = 6e-04
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 77 KKPLPIRHES-IFGMEQLVDGRTLSDYNIQKESTLHLV 187
K+ +P+ + IF +QL DG TL+DYNIQ +S LHL+
Sbjct: 118 KQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 30.7 bits (66), Expect = 0.37
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 89 PIRHESIFGMEQLVDGRTLSDYNIQKESTLHLV 187
P+ ++ +QL D T YN+++ S LHLV
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLV 70
>At3g63020.1 68416.m07079 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 204
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 377 HRHEHSGADCSPVHSRRRRWILPV 306
HR + +P HS RRRW PV
Sbjct: 16 HRTSSMAEEDTPTHSHRRRWSTPV 39
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 109 DGLVPDRQWLFDTISVSFAVLVMICMIL 26
DG+VP WL + + FA+LV I +L
Sbjct: 207 DGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 74 YHFCELCGFGYDLYDSLTLP 15
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At1g62720.1 68414.m07079 pentatricopeptide (PPR)
repeat-containing protein contains multiple PPR repeats
Pfam Profile: PF01535
Length = 426
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 74 YHFCELCGFGYDLY 33
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,366,618
Number of Sequences: 28952
Number of extensions: 155070
Number of successful extensions: 636
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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