Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30616
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    87   5e-19
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    28   0.26 
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    24   5.5  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    23   7.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    23   9.6  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 87.0 bits (206), Expect = 5e-19
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = +2

Query: 2   LDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQ 181
           L+VD               T+ DVIHS  +PSLG+K D  P RLNQ +  I+R G+F+GQ
Sbjct: 157 LEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQ 216

Query: 182 CSEICGANHSFIPIVIESISIKNFI 256
           CSE+CG  HS +PIV++ +S+++F+
Sbjct: 217 CSELCGVLHSSMPIVVQGVSLEDFL 241


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 122 PGRLNQTNF-FINRPGIFFGQCSEICGANHSFIPIVIESISIKNFIIELITTH 277
           PG  N T+  F    GI F +  E     HSF+P   ES   KN+++   ++H
Sbjct: 195 PGDHNSTDLKFAENIGIKF-ETPEQFFLGHSFVPPNFESFHPKNYLVRNSSSH 246


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 215 IPIVIESISIKNFIIELITTH 277
           +P++++S+SIK  +I L+ T+
Sbjct: 633 VPVLLDSVSIKPDVILLLDTY 653


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 184 FRNLWS*S*FYTYCN*KYFNQKL 252
           F N+W  S  YTYC    FN+ L
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEIL 222


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 122 PGRLNQTNFFINRPGIFFGQCSEICGANHSF 214
           PGR   +NF +    +F GQ  E    + SF
Sbjct: 165 PGRDLDSNFLLGIYNLFLGQAQECVLGHMSF 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,000
Number of Sequences: 5004
Number of extensions: 16812
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)