Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30616
         (298 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       112   6e-26
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       112   6e-26
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        53   5e-08

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (269), Expect = 6e-26
 Identities = 51/92 (55%), Positives = 65/92 (70%)
 Frame = +2

Query: 2   LDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQ 181
           L+VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQ
Sbjct: 146 LEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQ 205

Query: 182 CSEICGANHSFIPIVIESISIKNFIIELITTH 277
           CSEICGANHSF+PIVIE++S+  +I  +++ H
Sbjct: 206 CSEICGANHSFMPIVIEAVSLDKYINWVLSGH 237


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  112 bits (269), Expect = 6e-26
 Identities = 51/92 (55%), Positives = 65/92 (70%)
 Frame = +2

Query: 2   LDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQ 181
           L+VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQ
Sbjct: 146 LEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQ 205

Query: 182 CSEICGANHSFIPIVIESISIKNFIIELITTH 277
           CSEICGANHSF+PIVIE++S+  +I  +++ H
Sbjct: 206 CSEICGANHSFMPIVIEAVSLDKYINWVLSGH 237


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 27/57 (47%), Positives = 32/57 (56%)
 Frame = +2

Query: 2   LDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIF 172
           L+VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI +   F
Sbjct: 146 LEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,994
Number of Sequences: 59808
Number of extensions: 106735
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)