Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30615
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    29   0.34 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   3.2  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   3.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   5.5  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   5.5  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   5.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.5  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   7.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.3  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.3  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   9.6  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   9.6  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +2

Query: 140 ELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQLTLLVAFRIQNARRDVEAHLDR 319
           E  +A     A +AEA   E+ K+++  EP+++  +K++ ++ +   +++R  V   + R
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHR 152


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 164 LNASKAEASLAESGKDMLTVEPRESGGSKQLTLLVAFRIQNARRDVEAHLDRGDRCYRFF 343
           LNA + ++ L +     L      +G SKQ  ++VA R ++  R       R DR    F
Sbjct: 203 LNARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIRAEDLER-ARTRPSRTDRFNETF 261

Query: 344 S*HVHHGSEVRI 379
              +   +EV I
Sbjct: 262 EIDLEKTNEVEI 273


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 234 SREALNN*LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 359
           SR  ++  LY  +F    R  ATS  I + EID  G+F N+ +
Sbjct: 459 SRSMISASLYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/75 (24%), Positives = 28/75 (37%)
 Frame = -2

Query: 267 TSKVNCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCG 88
           +S  +  +   S  STVS S   S+   ++  +    PA  SSH   L      +     
Sbjct: 356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS 415

Query: 87  SSRTEQYYYRNDKPS 43
           S+     +Y N   S
Sbjct: 416 SAPVSSAFYHNSTSS 430


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 189 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 97
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 414 VDDFRSWRGVVLGRAASCCDLLRLS 488
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 189 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 97
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 487  LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPIASISAIQM 308
            LSL+ ++     P  TP ++ +    Y+  +     Y  FG V ++L    ++ I   Q 
Sbjct: 1299 LSLHNAEFQGLWPLRTPEEKEEVCAVYNISQRVCTKYVQFGNVFNLLH-AAVSYIRIHQK 1357

Query: 307  GF 302
            GF
Sbjct: 1358 GF 1359


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 306 PIWIAEIDAIGFFLNTCITAPKSGY--NSVRCRGSE*SVDD 422
           P W+AE+ AI  F++  + AP S    N+++   +  S+ D
Sbjct: 43  PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRD 83


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 108 PNVRNCGSSRTEQYYYRNDKPSVG 37
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 312 WIAEIDAIGFFLNTCITAPKSGYNSVRCRG 401
           W++++ A+    N+ ++ PKS ++ ++ RG
Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRG 133


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 DGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 55
           DG S  +PL  V E +  N G  +T   YY N
Sbjct: 191 DGGSK-QPLSDVDEDSYYNWGGKKTSAQYYVN 221


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 370 SPDITQFDVGA-RNSL*TTSVPGGVLCSVEQRRAAI 474
           SP +T  ++GA +  +     PG VLC +E  +A I
Sbjct: 62  SPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQI 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,322
Number of Sequences: 5004
Number of extensions: 42722
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)