Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30615
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108... 29 3.2
01_06_0695 - 31292622-31293317 28 4.2
12_01_0941 - 9316051-9316056,9316747-9317082 28 5.6
10_08_0774 + 20478203-20479393 28 5.6
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 5.6
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 27 7.4
07_03_0626 + 20060013-20060273,20061017-20061274 27 7.4
10_08_0500 - 18357828-18358649 27 9.8
10_08_0113 - 14896341-14897153 27 9.8
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 27 9.8
08_02_1485 - 27466761-27467753 27 9.8
02_05_0290 - 27571504-27572119,27572211-27572279,27573205-275733... 27 9.8
01_06_0723 + 31501900-31502808,31502846-31503295 27 9.8
>08_02_0917 -
22609543-22609852,22609925-22610266,22610596-22610858,
22611318-22612349
Length = 648
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 253 IDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNSL*TTSVP 432
+DF SRV+ + E RR + + L++F +R DI FD N + V
Sbjct: 368 VDFLSRVNRVEDEARRNGSWAAPHPWLNLFISSR-------DIAAFDRAVLNGMLADGVD 420
Query: 433 GGVL 444
G +L
Sbjct: 421 GPML 424
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = -1
Query: 499 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 335
P L Q D PS++ SST S P HR L P V + P
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTP 57
>12_01_0941 - 9316051-9316056,9316747-9317082
Length = 113
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 185 ASLAESGKDMLTVEPRESGGSKQLTLLVAFRIQNARRDVEAHLDRGD 325
ASLAE + + P +L +L+AF+ Q AR +EA LD D
Sbjct: 24 ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69
>10_08_0774 + 20478203-20479393
Length = 396
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 273 NATSKVNCLEPPDSRGSTVSISLPDSARLASA 178
NAT+ CL PPD+ G + ++ L SA+LA A
Sbjct: 192 NATAFSYCLAPPDT-GKSSALFLGASAKLAGA 222
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 52 VVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSQPSRI 201
VV I ST +VS + S RP+V TT ++P + RS P I
Sbjct: 308 VVPTTISTSTAAVSVS-AETISSPVRPIVPTTTAAVLPASVTARSAPENI 356
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 185 ASLAESGKDMLTVEPRESGGSKQLTLLVAFRIQNARRDVEAHLDRGD 325
ASLAE + + P +L +L+AF+ Q AR +EA LD D
Sbjct: 22 ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 197 RLGWLRP*RRSGIIP 153
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>10_08_0500 - 18357828-18358649
Length = 273
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = -2
Query: 156 PADGSSH--HRPLGRVHEPNVRNCGSSRTEQYYYRN 55
P G H H PL R CGS+ T+ YY N
Sbjct: 86 PRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNN 121
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +2
Query: 383 LSSMSGLGIVCRRL----PFLAGCCAR 451
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 469 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPIASISAIQ 311
Q AA+P TP R+ D ++ + + D GA M P S + Q
Sbjct: 5 QQPAAVPRWTPSPRRRQDDDEADRKGAAGMVSDLGASMRGTEGFPFGSGRSFQ 57
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 243 PPDSRGSTVSISLPDSARLASALEAFRHNPA 151
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>02_05_0290 -
27571504-27572119,27572211-27572279,27573205-27573332,
27573854-27573976
Length = 311
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 493 AGLSLNRSQHDAALPSTTPRQERKSSTDYSE-PRHRTELYPDFGAVMHVLRKKPIASISA 317
A L+ RS H AA PS+T R +SST S R +L+ D+ + + + + ++A
Sbjct: 173 ASLASCRS-HSAASPSSTQRSRGRSSTTCSSGKRQLPQLWRDWPLQRVLQQPQLVQPVAA 231
Query: 316 IQM 308
+++
Sbjct: 232 LEL 234
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 499 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 398
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,635
Number of Sequences: 37544
Number of extensions: 334145
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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