Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30615
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   4.3  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   4.3  
SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6)            28   5.7  

>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 451 PSTTPRQERKSSTDYSE-PRHRTELYPDFGAVMHV 350
           P+T PR +R+S T  S+  RH + L PD  A  H+
Sbjct: 8   PNTIPRSDRRSRTGISQRHRHTSSLTPDTMAGTHL 42


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 377 SGLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLV 261
           +G R R     +  DS  ++DP G+RR++  F  E R V
Sbjct: 87  TGFRVRFPVPTEFMDSPPIKDPPGVRRKIEEFTIEQRAV 125


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 71  CSVREEPQFRTFGSCTRPSG 130
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 483 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 394
           + T  ST   +R  HP +  S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197


>SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6)
          Length = 148

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 451 PSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 335
           P     +E+KS+ +   PR  T LY    + + +LR+ P
Sbjct: 106 PKRACTEEKKSAENLKRPRTETTLYFGLSSSLSLLRRNP 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,125
Number of Sequences: 59808
Number of extensions: 367864
Number of successful extensions: 2927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2923
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)